MmuINT0065109 @ mm10
Intron Retention
Gene
ENSMUSG00000036053 | Fmnl2
Description
formin-like 2 [Source:MGI Symbol;Acc:MGI:1918659]
Coordinates
chr2:53107353-53108458:+
Coord C1 exon
chr2:53107353-53107665
Coord A exon
chr2:53107666-53108251
Coord C2 exon
chr2:53108252-53108458
Length
586 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CATTTTCTTCTTTTCTCCAGCAC
3' ss Score
8.81
Exon sequences
Seq C1 exon
GAAATCTACAAAGATGCAAATACCCAAGTTCACACGTTAAGAAAAATGGTCAAAGAAAAGGAAGAAGCCATTCAAAGACAGTCTACCCTGGAAAAAAAGATTCACGAACTGGAGAAACAAGGGACCATTAAAATTCAGAAGAAAGGGGATGGGGACATTGCCATACTGCCAGTCATGGCCTCTGGCACGTTGTCCACGGGGTCAGAACTAGCAGTGGGTAACTATGTGGGATCAGTTCCAGGGGCCACCACCTCAGGACCCTCAGTCCCTCCTCCCCCACCACTACCTCCATCATCAGACACATCTGAAGCAG
Seq A exon
GTAAGATGCCCTGGTGGAACAGTAGTGATTTCCCTTATCTTGAGCAAGATTCCATTTTGAGGAGATGGAGAAAGGCTTAGTGGTTAAGAACATGCACTACTCTCCCAGACACCCGGGTTTGTCTCCTGGCACCCACAGAGCGTGGCTCACAACAACCTATAATGCCAACTCTAGAGGAAGTGTCCTCGCCTCTGGCATCTTCAGGCACAGAACTCATGTGCACATCCTCGAACACACGAGATAGGATAGATTACAACAAAAGTTAATCTTCATGTCACTTATGTTATAATATTTTCCTGTTTCTCAGTAAGGAAATGCTACCCTTGTGATTTTGTTTTCACATGCTTTTTTTATTTCATTTAAAAATGGTATTTGCTTGTTATTGTTCTGTTTGAGTGATGCATGGGTGTGAGTGAGTGTATACCGCAGTATGCTTGTCGCGCTCGGAGGCCACCTTTGTAGAGTCAGGTCTGGTTCCACTTTTATGTGGGTCCCCAGGATCTAAGTAGTGTTGCTTGATGAGCCAACTGGCCAGCCCAGTTTTCTCATGCTTTATGTGCCCATGACATTTTCTTCTTTTCTCCAG
Seq C2 exon
CACAAAATGGAACAGCATCGCCACCTATGTCCCCACCTCCTCCCCCACCCCCTCCACCCCCTCCCCCACCCCCTCCACCCCCTCCACTCCCAGGCCCTGCAGCTGAGACTTCACCAGCTCCTCCTCTGCCACCACCCCCACCTCCCTCTGCACCCCCGCTGCCTGGGACTTCTTCACCTACAGTGGTTTTCAACTCAGGATTAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036053:ENSMUST00000090952:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.876 A=NA C2=0.928
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=PD(21.0=41.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACATTGCCATACTGCCAG
R:
TAGGTGAAGAAGTCCCAGGCA
Band lengths:
342-928
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types