HsaINT0065127 @ hg38
Intron Retention
Gene
ENSG00000157827 | FMNL2
Description
formin like 2 [Source:HGNC Symbol;Acc:HGNC:18267]
Coordinates
chr2:152618846-152619718:+
Coord C1 exon
chr2:152618846-152619158
Coord A exon
chr2:152619159-152619508
Coord C2 exon
chr2:152619509-152619718
Length
350 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GTTTCTTTTTTCTTTGCTAGTGC
3' ss Score
8.34
Exon sequences
Seq C1 exon
GAAATCTACAAAGATGCAAATACTCAAGTTCACACATTAAGAAAAATGGTCAAAGAAAAAGAAGAAGCAATTCAAAGACAGTCTACCCTGGAAAAAAAGATTCATGAGCTAGAGAAACAAGGGACCATTAAAATTCAGAAGAAAGGGGATGGGGATATCGCCATACTGCCAGTTGTGGCTTCTGGCACATTGTCCATGGGGTCAGAAGTGGTAGCAGGTAACTCTGTGGGACCCACAATGGGGGCCGCTTCCTCAGGACCCTTGCCCCCTCCTCCACCACCACTGCCTCCCTCATCAGACACACCTGAAACAG
Seq A exon
GTAAGAAGCCTTGGCAGGAGGACTGAGGAAGTTTTGGAATATTTGTATTTCTTCTTTTGCCAACTGTCCACTTCTGTCCTTTGTCCGTTTTTGTTGGCATGTTCTTTAAGAATTGGTTTTCTTGAGTAGTTCTTAACTGTTTACATTTTGAGATTAAATTTATAAATCCTCATTTCACATATGTTGAAATATTTTTCCCACATGTCAATGAGGACATTTTTTGGTTTTTGAAAACAGTCCTTTGTCCTTTTAAGTGTGTTGTTTTCAGATGGCTTTATATGCACATGGCTTATTGCAGGAAAGCCATTCCCGTATTTTCAAAGTCCATCTGTTTCTTTTTTCTTTGCTAG
Seq C2 exon
TGCAAAATGGTCCAGTAACACCACCTATGCCACCGCCGCCGCCGCCCCCTCCTCCACCTCCTCCTCCCCCACCGCCCCCTCCGCCTCCTCCTCTCCCAGGCCCTGCAGCTGAGACTGTACCAGCTCCTCCCTTAGCACCTCCCCTTCCCTCTGCACCTCCGCTGCCTGGAACATCTTCACCCACAGTGGTTTTCAACTCAGGATTAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157827:ENST00000288670:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.905 A=NA C2=0.952
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=PD(21.0=41.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATATCGCCATACTGCCAG
R:
GGGTGAAGATGTTCCAGGCAG
Band lengths:
344-694
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development