GgaINT0047755 @ galGal3
Intron Retention
Gene
ENSGALG00000012525 | FMNL2
Description
NA
Coordinates
chr7:37159340-37160252:+
Coord C1 exon
chr7:37159340-37159655
Coord A exon
chr7:37159656-37160051
Coord C2 exon
chr7:37160052-37160252
Length
396 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
3' ss Seq
CTCTCCTCTCCTTTCTACAGTGC
3' ss Score
10.44
Exon sequences
Seq C1 exon
GAAATCTACAAGGATGCAAATAGTCAGGTTCACACCTTGAGAAAAATGGTGAAGGAAAAAGAGGAAGCCATCCAACGACAGTCAACACTGGAGAAAAAGATTCATGAGCTGGAGAAGCAGGGGACCATTAAGATCCAGAAGAAAGGCGATGGTGACATCTCGATCCTTCCTGTTGCTCTGGCCTCTGGGATGGTGCCAGCAGGGGCAGAGGCTGCAGCTGGCACGTGTGTCACACCGGCTGCTGGAGTTGCATCTTCTGTACCACTGCCACCACCTCCACCACCATTACCAGCCTTAGCAGCAGCATCTGAGGCGG
Seq A exon
GTAAGGAGCATCGTGTCCCCCAGCCACAAGCTGGCTGTGATCTGGAGGTGATTTGTTAATTCTGGGGTCAGTCACAGTGGCCTTATGCTGAAAAAACGCCATCAGTTGTAGTTACGAGGTTGCAGACCATGTTTGTCTGATCTATTTCTGAGCTCTTAATTAGGCGTTGGAAAGTACTAACTTCCCTTGTGAGGGTGGTTTCCTCCCATGTTTGTACTCTGAGGTAATTCGGTGGAGGGTCCAACAAACACTTGGGCTGGTATAGTGCTTGGGTAGAGAGGTGCAGTGTGGGGGACAGAAAGGGTAGTGGGCCCCGCTGGGAGTTGTTTTGTGTCTGCTTGTGCCGTGTTGGTTCCTGTTCACTTCAGTACCCCTTCTCTCCTCTCCTTTCTACAG
Seq C2 exon
TGCAAAATGGCCCTGTGACAGTGCCAGTGCCACCTCCACCTCCACCACCACCGCCTCCACCACCGCCTCCAGCGCCACCACTGCCAGGTCCTGCCTTGGACACGGCTCCTGCCGCCCCGCTGCCCCCGCCGCCCCCGCCGTCAGCACCCCCCCTGCCCGGCACCGCCTCTCCCACTGTGGTTTTCAACTCAGGGCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012525:ENSGALT00000020460:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.805 A=NA C2=0.891
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=PD(21.0=40.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCTTCCTGTTGCTCTGGC
R:
GCAAGCCCTGAGTTGAAAACC
Band lengths:
354-750
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]