BtaINT0063364 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004383 | FNBP1L
Description
formin binding protein 1-like [Source:HGNC Symbol;Acc:HGNC:20851]
Coordinates
chr3:50108822-50110977:-
Coord C1 exon
chr3:50110849-50110977
Coord A exon
chr3:50108969-50110848
Coord C2 exon
chr3:50108822-50108968
Length
1880 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
TTTAAATTCCTAATTATTAGCAA
3' ss Score
1.98
Exon sequences
Seq C1 exon
GCTAAACAGCAGTTGAATCTACGTACGCATATGGCTGATGAAAATAAGAATGAATATGCTGCACAATTACAAAACTTTAATGGAGAACAGCACAAACATTTCTATGTAGTGATTCCTCAGATTTACAAG
Seq A exon
GTAAAATTTAGATATATGAAATTAACCTTATTTTAGATCTGAAAAACCTAGTCTTGAAATGTAAAACTTTAAAATGCCAGGCATCAGTCAGAATGTTTCTAGATTCACTAGTCATCAAAATTGGTAATAAATTTATGATTGATTATAGATGTGAAAAGTAATTTTTTTTTACTTTGAAATCACAAATTTTTCTACAGATTTCATAGTGGTATATTAAATAATTCACTAAAACAATGACATTTCTAGATAAATTCTCATGCTACATTAAGTATTGTGAGATGGGAGACTTCATTGGAATTTTGTATTGTAGTCTGCTTATCTAGAATTTGGACGTAGCCTTTGACACTATAACAGGATCATTGGCGTTAGTCCAGATGGCAGAAATAAATCTTAAATGCATTTGCTAGCCTGGTTTTTGCCTGCTTGTCTTCCTAGCTGTCAGATCATAAATGTAATTCAGGCTTCTAAACCCCATCCATCATCATTTAGCAGTTGCCAAACAGCCCTCAGGTAAAGACCCTGGAATTTACATGAAGGTGAAATTATGTTACTGCCTATTCTAGAAAGAAGAGAAATTAGAAAAAAGGGATTTAGTGAAACAGTGTTGAAAGAAGTGGTACCTGGGAGAGCTGAGCTTATGTGAAAAGTGTACACAGTCCAACATGTACACCTGTGGCTGATTCATGGCAATGTATGGCAAAAACCACCACAGTATTGTAAAGTAATTAGCCTCTAATTAAAATTAATTAATTAAATTTTTTTTTAAAGTGTCAGTCCAAATACACCCCCCGCCCCAGCCAAGCTATTAATAGAACTACAAAGGAAACTGCAAAGGAAGCATAGTGAGAGGTGGTGGACTAGAGAAAGTATGATATTGGTCGTTTAATCCAGGGCATCTAGTCAGCCAGTCCTCACTCTGTAGTGCTTTTCTAAACTTAATAGCTAAGTCTTCATATTCAGGGGAGACCTTAATTTGTAGATTCACTGCTTTGTTAAGTTTGGGGGCTTGCTCTTTTTGTTTGGACTTTGCTATGGAGCAGTCTTGCCACTTTGTGATACTGGATTCAGTCCTTCTGTGAAAATGCTGGTCTCAAAATAAATTCCCAGGCTTTGGGAAGTAAAGAGGAAAAAATAGTATGAAGGCTATAGGAGTTAGGGGACTTAAGCAGTGTAATTGCTTCCTAAAAAGAAGAAAGGTCATTGTTGTTGACAAATAGGAAGTGTCAAAAATTGCCTTTAAGTTATTTGGCTTCATGTGCCCTGGCATAATTCTGAATAGCAGGTGCCAGTGAATTTTTTGAGTAGGGATCCCATACATGTACCACTTTGACCTTGCAGCTTCTTGTTTTTCCTCTTGTGTCCCCAACCTTTTGACACTTTAAGCTGTAGACTGTAGTAGGTTTGGGTGCCTGTTAGTATGTGGTTGACTGTGGATTCTTAGTCCAGCCAGATCTTGGCAAAGTGTTCTGAACTAACTTAAGGGTTTAGAAGTCTCACATTTGTATATGTTGTATGCCAGCTGCTTGAAAAAGAAATAAAAGTCTCAAAATTTCTGTTTTCAAATGAAACTTTACTGAAGAATAAAAGGCAGAGGTTGTATGAAGCAGGGAGCTGGTAAGCTGTAGGGAGTCCCTTATAAGGCTTGAAAACCGGTGTCACCTGGTTTTAGGATATACTAAGCCTTGAATTTTTATTCTTTTGCTATTTCACAGGCCTCAAGTTTTAAGTGCTTTCACTCTGTAGCACTTGTTAAAAGGTACTTAAAACAGTGTAACTGTTTGGGGATATCTTCGTGGGATTTTTGTTTGTTTGTTTTTTGGAAGGGAGTTTCTTCAGAATGAAAAGTCAATTTTCTTTTTTTTTAAATTCCTAATTATTAG
Seq C2 exon
CAACTGCAAGAAATGGATGAACGAAGGACTATTAAACTTAGTGAGTGTTACAGAGGATTTGCAGACTCAGAACGGAAAGTTATTCCTATCATTTCAAAGTGTTTGGAAGGAATGATTCTTGCAGCAAAATCAGTTGACGAAAGAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004383:ENSBTAT00000005756:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.512 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAAACAGCAGTTGAATCTACGT
R:
TTCGTCAACTGATTTTGCTGCA
Band lengths:
270-2150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]