DreINT0069256 @ danRer10
Intron Retention
Gene
ENSDARG00000020131 | fnbp1l
Description
formin binding protein 1-like [Source:ZFIN;Acc:ZDB-GENE-040801-155]
Coordinates
chr8:15024331-15025671:+
Coord C1 exon
chr8:15024331-15024459
Coord A exon
chr8:15024460-15025524
Coord C2 exon
chr8:15025525-15025671
Length
1065 bp
Sequences
Splice sites
5' ss Seq
ACTGTAATG
5' ss Score
-3.61
3' ss Seq
TTTTGTTTGTGCTCATGCAGAAT
3' ss Score
8.61
Exon sequences
Seq C1 exon
GCAAAGTCCCAGCTGTATCTGAGACAACACATGGCGGAGGAGAGCAAGAACGAGTACGCGGCCCAGTTGCAGAACTTTAATGGTGAACAGTGGAAACATTTCAACCAGGCCATCCCTCAGATATTCACT
Seq A exon
GTAATGACATCTCTCATCTTTTAGTTTCTAAAAATTCAATTGTGATGTTTGAGTTAGTTCATCAAAGCTAAGCTTAAAGTTAAAACCATTTGTTAGCATGTTTTAGCATGTTTGCAGCATAATGTAGCACACTGCTTGTGTGTTTTAGCGCTTACTTAGCATCTTTCCACTATGATTTACTTTCCTGCTTGTGTTCTGGCACATTTCTGCCATCTTTCGCTTTACTGCCATGTTTTAGCACATTTCTATCATGCTTTGGCACATCGGTTAGACTACACTGGCAGCATGATTTACCACATTTCTATCATGTTTTACTATAGTTTTAGACAAGATTGTATTGTTTAACATAATACTAAAATGTTTAACACATTTTTAACATCTTTTCTTTTCAGAATTAACTACATTGCTTGTTGTGTTTCTAGCATGTTTCTAATATGGAAGAATGCACTGATAACACTTCCTAGCATGATATACCAAACACAGAGTATGCTTATAGGATGATTTAACACTGGAAACTCATTCTTAGCTCGTTTCTAACAGCTTTTTAGACTACTAACTTTTTAGCACCTGTGTAGCATGTATTACTAAACTAGCATGTTTTAACAAATTGCTATTATGTTTCTAAAATTATAGCGACATTTTAGGACATTGTTTACAAGTTTGCCATGATTTAACTTACTTAACACTTATTTTAGCACATGCTTTAGCTTAATTGGATGGATGGATGGATGGATGGATGGATTGATTGATTGATTGATTGATTGATTGATTGATTGATAGCTTGATGAATGGATGGATTAATGGTTTAGAAGGGATTGATGGATGGATGGATTGGAAAGGATGTATGAATTGGAAGGGATGGATGGATGGATGGATGGAAGGAAGGGTGGATGGATGGATGGTCAGATAATACATATTTCATATACTATCAGAATTTTTGTATGAAGTTTAATTGGATTTGCAGGGCTTGTGGGAGTTTAACTGTGTTTTTGACAGCTAGAGTTTGTTAATGTCTGCATGAATTTTAGTTTTTGTGACTGAAGCTTTTTGTTTGTGCTCATGCAG
Seq C2 exon
AATCTTCAGAACATGGATGAACGGCGAACTGTGAAACTCGGTGAGATGTACCGGAGTTTTGCTGAGGTTGAGCGAAGAGTCATTCCAATTGTCTCAAAATGCCTGGAAGGCATGGTTACTGCTGCTAAAAATGTGGACGAGCGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020131:ENSDART00000045038:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=NA C2=0.112
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAGTCCCAGCTGTATCTGA
R:
TCGCTCGTCCACATTTTTAGCA
Band lengths:
273-1338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]