HsaINT0065333 @ hg19
Intron Retention
Gene
ENSG00000137942 | FNBP1L
Description
formin binding protein 1-like [Source:HGNC Symbol;Acc:20851]
Coordinates
chr1:93996312-93998625:+
Coord C1 exon
chr1:93996312-93996440
Coord A exon
chr1:93996441-93998478
Coord C2 exon
chr1:93998479-93998625
Length
2038 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
AAAAAATTCTTGATTATTAGCAA
3' ss Score
1.21
Exon sequences
Seq C1 exon
GCCAAACAGCAGTTGAATCTGCGTACGCATATGGCCGATGAAAATAAAAATGAATATGCTGCACAATTACAAAACTTTAATGGAGAACAACATAAACATTTTTATGTAGTGATTCCTCAGATTTACAAG
Seq A exon
GTAAATCTTAGATATGAAGTTAATCTAGTTTTAGATTAACTGGTGTTTAAATATAAAACTTGTAAGTCTTAGACATCAGAATCTTTCTAGATTCACTAGACATCAGGGTTGGGGTGAGAGATTCCTTTATGATTATAGATTTGAAAACAAGTGTTTTCTAACTTTTAAGTCACACATTTTCCTACGTATCTACTATTAGTGTTATAAACAGTTTACTAAAACAATGACATTTGTAAGATACATTTAAATACTTTAAGTATTTTGACATGACAAAGGAGAATTAATTGAATTTGTATATTGTAATCTGCTCACCTAGAATTGAGATGTAGCATTTTTATACCAAACCAGAGTCATTGGCATCAGTCCAGATGGCAGAAATAAATCTTACAAAATATATTTGCTAGCATGGTTTTTGCCTGCTTATCATGCTGGCTCTGTTAGATGATAAATGTAATTCAGACTTTGAGCTTGCTTATAAATCCTGTCTGTCATCACTTGATGATAACAGTTGCCAAACAGCCTCAGGTAAAAAAGACCTCAGAATTTTCATGAGGGTTAAATTATTTAATTGCCTGTTCTAGAAAGAAGAGAAATTACAGAAAAGGGATTTAGTAAAGCAGTGTTGATGAGTTATTATCTCAACGAGCAGAGCTTCTGTGGGAAGAGTGTCAGCCCGGGTACACTTTTTCTTCTTTATAAGGCAAGTTGGAAATACAAAGAAAGCACAGTGAGAGATAATGAACTGGAGTGGGGACCAGAATTCTGGTCATTGAATCCAGAGGGCCAAGCCTGCCAGTCTTCACTGTGATGCTTTTCTAGGCTTAGTAGTTAAGTCTTCATATTCTGGGGAAACTATAACTTGTGGAGATAAACTACCTTTTGTGTTTTGGGCCTGATACTTGGATTTGGACCTTTCTATGGAGCAATTCTGTGAAAATGCAGGTCTCAAAGTCCCAGGCTGTGGGAGTTTGGGGAGACAAGGAGTGTAACTGCTGTCAATGAAACAGCAAGGTCAGTGCTGGCAAATAGGATATGTCAAAAAAAAAATGCCTTTAAGTTATTGGACTTTATGTGTTCCAACATATTTCCTAGTGGCATGTGCCAGTGAATTTTCAGTTGTGAGGATTCTATATGTGCCACTTTGAGCTTGTGACTTCCTGTTTTTCCTCACGTATCCCCAGCTCTGAGGTGTACACTGCAGTAGGTCTGGGTACCTGTTGATAAACAACTAGTATGGACTGTTGGTCCAGCCAAGTCTTACCAAAGTATCCTGAATTAACTTGAGGTTAGAAGTCTCAGACTTGGCCGGGGGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCACGAGGTCAAGAGATTGAGACCATCCTGGCCAACATGGTGAAACCCCATCGCTACTAAAAATACAAAAATTAGCTGGGCATGGTGGCACGTGCCTGTAGTCCCAGCTACTTGAGAGACCGAGGCAGGAGAATTGCTTGAACCTGGGAGGTGGAGGTTGCAGTGAGCCGAGATCGCGCAACTGCACTCCATCCAGCCTGGCGACAGAGCGAGACTCCGCCTCAAAAAAAAAAAAAAAAAAAAGTCTCAGTCTTGTATATGTTATGGGCCAGTTGCTTTAAAAAAAAAAAAAAGCACCAGAATTTTGTCATCAAATGAAATGTTTTCTGGAAGCATAAACAAGAACTACTCTGATTGAATAGTAAAAGGTGGGAGTGCTATGGGGCAGGGAGCTGATAGCCAGTAAGGGGTCCTTTTAGAAGGCTAGAATCCCAGTGTCATCTGGTTTTAGGAAAACAATACTAAGTGCCTTACTATTTTTTTTCTTTCTTTTGTTGTTTAGCATGTCCCAGGTTTTAAGTATTATAAGTCAATAGCACTTGTTAAAAGGTATTAACAACAGTGTAACTATGAGGGTAGAAATATTTAATTTTTGATGGGGGATCACTAATTGAACTCCTTTAGAATGATTGAAAAATTCAGTTTTCTCTTTTTAAAAAAATTCTTGATTATTAG
Seq C2 exon
CAACTACAAGAAATGGACGAACGAAGGACTATTAAACTCAGTGAGTGTTACAGAGGATTTGCTGACTCAGAACGCAAAGTTATTCCCATCATTTCAAAATGTTTGGAAGGAATGATTCTTGCAGCAAAATCAGTTGATGAAAGAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137942-FNBP1L:NM_001024948:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.512 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)