GgaINT0035269 @ galGal3
Intron Retention
Gene
ENSGALG00000005850 | FNBP1L
Description
NA
Coordinates
chr8:14576525-14578564:-
Coord C1 exon
chr8:14578436-14578564
Coord A exon
chr8:14576672-14578435
Coord C2 exon
chr8:14576525-14576671
Length
1764 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
ATCTTCCTTTCTGCTTGCAGCAA
3' ss Score
10.2
Exon sequences
Seq C1 exon
GCAAAGCAACAGTTAAACCTGCGTACACATATGGCTGATGAAAACAAAAATGAATATGCTGCACAGCTACAGAATTTTAATGGTGAACAGCACAAACACTACTACATTGTCATTCCTCAGATTTACAAG
Seq A exon
GTAAAATAATTAATGTAAAAAAAAAGTATGACTGCTTTTTTTTTTAAAGGAGAAAGTAGAATTTAAAATGTCAAACTTCTCTTTTTTTATACAGTAGTAGATAATTTTATCAAGAAATTATCATAATCTCATACAGTCGATGTTTATGAGAAGAGTTTCTGTTTTCAGTAAATATGCTTGCACTTGTACTGGAAATACTTTGTTCTAATTTCTATGAAGGTTTTACATAAGACATGAAATATTAATGAAACTGAACAGTAAAATAAAGATTTTGGACATCTGTATGAGACCAAATGTTAAAACAATCATTCTAGCACAGTTTGATCACTAGTTCTCTATTTTTTTCATGCACTGACTCGTAGACGCATAGGAAAGCACGTAACTAATGGTGACAGTGTGGTTTAATGTGTCTCATGTAGCAGGTTTATACTGGGTAGATCTGGAGGCAGAAGTGCTCCCCCCACACCCGAGTGGTCATTGCTTCAGCAGTATTACAAGCAATGCACAGAACTCCCTAAAATATCACAAACGCATGGAGTACGTGGAGTGTGGAAATGGAAGGAAAGTAAAAGTGTTGACTTCATTTGAAGGTGTATCAATTTAAGAATGTTTGATGTTTACCTGGCTGATTAAGGAATTATATAATATTTTAACTGATAAGCAGTACTTCTGTAGCTCTGGCATTAACACTGATGGAATAATTGCAGTGAAGTCCCAGGAGAAACAGTTCTGTTGTTTTCGTAGCTCAGTCCTATTTTGCTTGTGTTGCAATAGCTTATGTTTTCTAAAAATCTCCAGTGAAAGCAAGAAGGCCTGGTCCTACTTTCTCTTGGGACTACATTTTCTAAATTATTTCCTTACTAAACACTGCAAGTGTTTAGTAACTGTATGGCAGTGCCTGGGGAGAGATGTTTAGCAGGTCTAAGGTTGTTGCTTTGTTTCACTGATGAAATTAGATGCTATTTGAGGTATCTGCCTTCGTTAGAATAGATATAGGAAAGATCCATCTTTACCTGTTTTTGATAACCTGTTTATGTATTTATTGCCTGTTGTTTCCTTCTCTTTGTCACATTATTTTAGGTGAAAGGTTGTAGGCTGTTATCTTACTGGCATTTCTCTTTAATTTGTTGTTTTCTGTTGTGTTCCAGTAGATTTTATTTACAGATCTTCTGTAATGGTAATCTTTTTTTTCTTTATTTTCTTGCACACTTGTGAAGGAAATGGTTTGTATTTGAACGAGAAAGTTTAAATGCATATGGTTTTAATATTTTGAACCTTTCATATTTTTTGTTAACCATAGGTATTTGTTGGAGAGGATAGAAATAAATGCAGAGTTAAAGAAGATGAGATTTCACGTGGATATACCTATTACCAGAGAAGTTGTTTGGAAGGAGAGAGTGAGGAGATGTAGAAAATAATAGGATTTCATCACTACAGTTCCCATTTTTGCCTGAAAATTTTACCTAAGTAGGAGGCTGTAGGCACTTTATACAGGCTTTAAAAATAAGGAATAGAAAGTTCAGTCCTCCAGACACCGTTTTATAAATTAAAAAATATAAACACTTTAATTTCTGTTATGGGCATCTCAAATCCATGTCTGACAGGACTTCTTTTTTTTTTTTTAATAGGTTCTGTTTTGTTAGGTAAATAAAAATGCTGGGAAGGCACAGAAATTCCATACTACACTGTGGCAACCACAGTAACTGCATACATCAGGATCAGGAAAAAACATCCATAAATACTTATCTTCCTTTCTGCTTGCAG
Seq C2 exon
CAACTTCAAGAAATGGATGAAAGAAGGACTATCAAACTTAGTGAATGTTACAAAGGCTTTGCTGACTCTGAGCGCAAGGTTATTCCAATCATCTCTAAATGCTTAGAGGGGATGATCCTTGCAGCAAAATCAGTTGATGAACATAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005850:ENSGALT00000009401:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.442 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGCAACAGTTAAACCTGCGT
R:
TGTTCATCAACTGATTTTGCTGCA
Band lengths:
271-2035
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]