RnoINT0061843 @ rn6
Intron Retention
Gene
ENSRNOG00000013798 | Fnbp1l
Description
formin binding protein 1-like [Source:RGD Symbol;Acc:1305386]
Coordinates
chr2:226708767-226710632:-
Coord C1 exon
chr2:226710504-226710632
Coord A exon
chr2:226708914-226710503
Coord C2 exon
chr2:226708767-226708913
Length
1590 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TTTGAATTCTGAATTATTAGCAA
3' ss Score
0.18
Exon sequences
Seq C1 exon
GCCAAGCAGCAGCTGAACCTCCGCACGCACATGGCTGACGAGAATAAAAACGAATACGCCGCGCAGCTGCAGAACTTCAACGGGGAGCAGCACAAGCATTTCTACGTGGTGATTCCTCAGATTTACAAG
Seq A exon
GTGAGGGCACTCCAGTTGACTTCAAAGGAGTTTTGAGACAAGGCTTCACTGTGTCTGTTCCCTGGTTGACCTGAGCTCACAGAAACCTACCCCTGCCCCTGGCTGGGATTAGAGACGTGTACCACCATGCCTAGCCCAAGAGTTAATTTTAAGTTAGAAAAATTTTTTTAGTTTGGAAATGAGACCTAGGGTTTTACATGATGTAAGAAAGCATTTGCAGTGTGAAACACCTCCAGTCCCCAACTCACATAGTAAATCTTAGAAATCTGAGTATTTCTAAGTTCACTAAGTTAACGAAATTCACCGGTGGTAAATTTTATTCTAATTGTATGTGAAAAGTAGATATCCTTATTTTTGAACCACAGACTTTTCTGTATGTTTATTATTAGTGTTATTGTCTCAGTTTGGGGTTTTATTGCTGTGAAGGGACACCATGACCAAGGTAACTCTTATAAAGGCAAATATTTCATTGGGATTAGCTTACAGATTCAGAGGTCCAGTCCAGTATCATGGTGGGAAGCATGGCAGCCTGCAGGCAGATTTGGTACTGGAGGAGCTAGAAGTTCTACATCTGGATCTGAAGGCAGCGAGGAGACTAATTTCCACACTGGGTGGAACTTAAACATATATATGCCTTCAGAGCCTGTGACAGACTTACTCCAACAAGGCCACACCTACTCCAACAAGGCCACACCTACTCCAACAAGGCCACACCTCCTAACAGTGCAGCTCCCTGTGGCACGACTTAGGGAACAAAAATGCACCTGATAAGTGAATTACCACTTGTGTTTGGGAGCCACTTTGGAGCTTGCTTAGGGCAGTCTAGTCATTTAGTGGTCAAACAAACAAATAAAAAACCAAGGTCTCAAAATAAGTCTCCAGACTTTAGAAAGTAACACCAAAAAGTGATCTGACGTAGAGTTTGAGGAGGTGAGGAGAAAGGCCCGTGCTGGCTGAGAACAAGTATGCAAAGATGACTTTTACTGACTGCACCTGTCTCAGCACATTTCCCATAGTGATTTTGGACATGGGGGATTTTACACATGTGCTGCTTTGGTGACGTGACTTACTGTTTGCCTTTTATGCTGTCAGCTCTGAGCTATAAACTATACTAAGGTCCGGGTACCTGTTTGTGTGCCATCAACTGTGATCCTTCATCAGCGAGGTCTTACTCACGTCCTCTGAACCAGTTTAAGGACTACATCTTAGTCCTTATGGACAGTTGCTTTGGGGGCAGGGGGGACAGGCAGGGATTAATGCTAGAGTTTGGTGTTTAAATGGAGTGTTTCCTGAAAGCATAAAACTACCCTGATTCAAAAGGAAAGGGTGAGTGAGGTGTGGAGAAGAGACCTGGTTGCCAATTGTGTAATTTTAGATGATTTTTAATATCAGTATTAAAAACCTTATATTCTCCTCCTTTTATTATTTAACAGCCCATAGAGTATAAGAATTGTTAAGTCTATATAGCACCATTGAAAGATCTAAAAATAAAAGCTAATACAGAAGAAATATTTTGGGGTTGGTCACTAATTGTTCTCCTTCAGAATAGAAAATTCAATTTCCCTCCTTGTTTGAATTCTGAATTATTAG
Seq C2 exon
CAACTACAAGAAATGGATGAACGAAGGACAATTAAACTCAGTGAATGTTACAGAGGGTTTGCAGACTCAGAACGCAAAGTTATCCCCATCATCTCGAAATGTCTAGAAGGAATGATTCTTGCAGCAAAATCAGTTGATGAGAGAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013798:ENSRNOT00000019244:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.512 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCAGCTGAACCTCCG
R:
CTTCTCTCATCAACTGATTTTGCTGC
Band lengths:
270-1860
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]