BtaINT0063365 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004383 | FNBP1L
Description
formin binding protein 1-like [Source:HGNC Symbol;Acc:HGNC:20851]
Coordinates
chr3:50106432-50108968:-
Coord C1 exon
chr3:50108822-50108968
Coord A exon
chr3:50106636-50108821
Coord C2 exon
chr3:50106432-50106635
Length
2186 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
GGTACTGTTCTTACATGTAGGAC
3' ss Score
6.62
Exon sequences
Seq C1 exon
CAACTGCAAGAAATGGATGAACGAAGGACTATTAAACTTAGTGAGTGTTACAGAGGATTTGCAGACTCAGAACGGAAAGTTATTCCTATCATTTCAAAGTGTTTGGAAGGAATGATTCTTGCAGCAAAATCAGTTGACGAAAGAAGA
Seq A exon
GTAAGTGTTTTATAATTTGAATAATGTATTTGATTTAAATTAATGAAATGGATTGGGGGGAGTAATTGATGGATTATTGATTTTAAGTTATATTCTGTATAAGTAAGTCTGGCTATACATTAGACTCCTTCAGGCTGTAAGGATCACTTTAAACACTAAAGTTCTAATCATTTAAAAGAGTTCTAATGCTTCTCTTTCTTTTCCCCACTAATTTTTCAGTTCTATTCCAAGAGTATAACTAACTTGTAAACTGTATGTTGCAAACTGTATTATACTATTATCATTTAAACTGTTAGAGAAAGTTTAAAGAAAGTTTAAAGAAGGAAATGGTCAGATCTAGAGTTAAAAGAGTTCCTTATTGCCAGAAGAGTTGGCATTTGAGTTGCATTCTGAACCGTGAGTAGTATATGAATGATGGCCCATGAGAAAAGAAAGGAGAGCATTGTGAGTAGAAGTAACTGCCTTGAAGAAGCCCTTCTCATGCAGGCTGCAGTCATCAGGGTGTACACACTGAGCCTCAACCAACATCCTTGTTTTAGAATCATCATGTCAACCTGTGACCCTGAATCCATTTCATTACCCATTTCTTTTTATCAGTCTTTTTTTTTTTTTTTTAATTGGAGTATGGTTGATTTACAGTTTTGTGCCAGTCTCTGCTGTACAGCAAAATGACAGTTATGTACATATATACATTCCTTTTTATATTCTTGTCCATTATACTTTATCAAAGGGTATAGAGTATAGTTCCCTGTGTTCTGCATCTACAGTAGGACCTTGTTGTTTATCCATTCTAGATATATAATAGTTTGCATCTACTAACTCTAAACTCCCAGACCATCCCTCTCTTTTCCCTTTTTTCTGTTCATTACCTATTTTTTTAAATCTGATTTAGGTTAAAAGAAATTGACTTTCTTTGTATTGTCTTTCTGGCAAAAAGTCTTAAGATATTTCAATTCTTCTGATCTGTTTCTAAAGATAATAAGAAGCCCTGTTCTTCTTGAAGAAATAAATTTAATTATCTTATTATATCTTGAGTAAGGTTTAGAAAAGTTCTCGTACCGGTTATTTTTCAGTAAATATTGATTTAATGACTCAGAAACTGAGGATATGAGAGAAGAGAAAGAAAAGAGAACCAGTGTTTGGGGAGTGCAAAATAGGTACTGCATATTTTAGTCTTGACAGCAGGTTGGTTTTGTATGAGTGAGGATCTTTCCTGTAACAGAATTCTGACTTAAATAAAAGAAAGAAAAGATTTGGGGGTTCTTTAATTGGGAATTCAAAGTTACATCTTGGTGTGACGGATCCAAGATTAGAAATATAGTTAGGTCCCTCCTCCTCTCAACCTGTTCTTACCCTTTAGCAAATGATTGGTGTGGGTGGCATTAGTGACAAAAAAAAAAAAGTAAGGTATAACTTAAGGATGACTTTTGACTTAAGTGATAGGCAAAATGTACTATCAGCAGAAATAAGGAATAAAATAGGAGAGGTTGGTTGGAGTGCGGGAGGAGTTTGTAAAGAATTCTGTTTGAAACTAATGAGTTTAAAGTGTCAGTAAAACATTCACATAGAGGTATATGTATGTCCAAAACTAGCATGTAATACTTAGGTGAGCTTTACGGTTTTGGGTGAATGGTCTAAGCTTTACAATTTCAGAGTTACTTTTTACACTCTACTGTTTGTGAGATCTTCATTGCTCTGTTAATATTTCCAAGTATGTCTTTAATACATTTTATTTATCCTTTCCCCTTTTGGGTAAATGGAAGCCTTTCTGCTTGTCTCCTACCCTGTTTTACAGTTAGACACCCTTTCCTCTATTCTGTAAAACAGAAAACCTTTTTCCTTTTTCCTTTAAAACTTGGAATTTCTTCTTGAGAGTAACCTCTTCCTATATCCTTTTTTGTCAGTTAGAAGTTAAATATCAGCTAACTACTCAAGATGAAATTCAGTGGGTTAAAGCTATGGAGTGAAAACATCCATGACTATTACAAATTTTATAAGTGGTCATTTGTTTGTGAAATTTTTTTATAGGAATTAAAATATTTAGGGGTTATTTCATATTTACAGGAAATAATTATTTATTTTGAACCTTTAATAAGTATTGTAGAATTATTTCTTTAAATTTTTATTTGTTTTCTGACACAGATTTAAGATTTTGAAAGCTAATATGGTACTGTTCTTACATGTAG
Seq C2 exon
GACTCTCAGATGGTAGTAGACTCCTTTAAGTCTGGATTTGAACCTCCCGGAGACTTTCCATTTGAAGATTACAGTCAGCATATTTATAGAACCATTTCTGATGGGACTATCAGTGCATCCAAACAAGAAAGTGGAAAGGTGGATGCCAAAACCACAGTAGGAAAGGCCAAGGGCAAGTTGTGGCTCTTTGGAAAGAAGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004383:ENSBTAT00000005756:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.255
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]