GgaINT0035270 @ galGal3
Intron Retention
Gene
ENSGALG00000005850 | FNBP1L
Description
NA
Coordinates
chr8:14575698-14576671:-
Coord C1 exon
chr8:14576525-14576671
Coord A exon
chr8:14575902-14576524
Coord C2 exon
chr8:14575698-14575901
Length
623 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
CTCACTCATGTCCTGTTTAGGAC
3' ss Score
9.53
Exon sequences
Seq C1 exon
CAACTTCAAGAAATGGATGAAAGAAGGACTATCAAACTTAGTGAATGTTACAAAGGCTTTGCTGACTCTGAGCGCAAGGTTATTCCAATCATCTCTAAATGCTTAGAGGGGATGATCCTTGCAGCAAAATCAGTTGATGAACATAGA
Seq A exon
GTAAGTAGAACTGAGCTACTTAGGAAATGCATATTAGAAAGTGAATTGATATGTGGAGAGTGGGAGAGAAGAGGAAAATGACTTGATCCTGTACATTTATATGTTTTCAATTATTTGCCATAAAAGTATTTGTCTGAATGATTGCTTCCAATACTGCTGGTGTCTGTTCTCTTTGTGTTTTATTGTTTTACTTTGATCTAAAGATGTTTGACATCATACATACTTTTGGACGCATTGTTTTGCGTATCCTGAAACATCTCAGAATATCAACATGGTTGGTACCTTCTCTGCTACGTAGCATCAAATTGGATGAAGTATACAAAGATGGAGTCTAATTTGGGTATAAACCATTGTCCTGCCTTAAATTCACGAGAACCTGTGGGGACTGTTAGCTGGGTTCTGAATAGCAGGGTGTGTATGCTTTGATTAGTGCTGTTAGTAACACTGCTGAGGAAAAAAAAGAGCATCCTTTATCTTCAGTCCAAAAGCATGCATTTTGTGTCCTCTCTGTTTTCCACCTGTGAATCTTTTCACGTGAAGGGAAAAATTATATCTTCGTGTTTTTCTCTTCTCTCTCAATGACTGCTTGATTTTCTTTTTCAACTCACTCATGTCCTGTTTAG
Seq C2 exon
GACTCCCAGCTAGTGATAGACTGCTTCAAATCTGGTTTTGAACCTCCTGGAGATTTTCCATTTGAAGACTACAGTCAGAATATTTACCGGACTATCTCTGATGGAACCATCAGTACACCAAAGCAGGAAGGAATGAGAATTGATTCAAAAACTACAGTGGGCAAGGCGAAAGGAAAGCTGTGGCTATTCGGAAAAAAGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005850:ENSGALT00000009401:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.235
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAAGAAATGGATGAAAGAAGGACT
R:
CCACAGCTTTCCTTTCGCCTT
Band lengths:
326-949
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]