DreINT0069257 @ danRer10
Intron Retention
Gene
ENSDARG00000020131 | fnbp1l
Description
formin binding protein 1-like [Source:ZFIN;Acc:ZDB-GENE-040801-155]
Coordinates
chr8:15025525-15028644:+
Coord C1 exon
chr8:15025525-15025671
Coord A exon
chr8:15025672-15028440
Coord C2 exon
chr8:15028441-15028644
Length
2769 bp
Sequences
Splice sites
5' ss Seq
AGGGTATAT
5' ss Score
3.89
3' ss Seq
ATACTATTGTCTTTGAACAGGAT
3' ss Score
9.01
Exon sequences
Seq C1 exon
AATCTTCAGAACATGGATGAACGGCGAACTGTGAAACTCGGTGAGATGTACCGGAGTTTTGCTGAGGTTGAGCGAAGAGTCATTCCAATTGTCTCAAAATGCCTGGAAGGCATGGTTACTGCTGCTAAAAATGTGGACGAGCGAAGG
Seq A exon
GTATATATTTTTTTTCTTTGTTTTTTTTTTCATAATAAAAATAATTCCAAGTAAATATAAAAGCATTTAGAATCTAACAAAATGTATGTTTCCACAAAACCTTTTTTTTTTTAAACCGCACTGATGATAATTGAAAAGATTTTCTGAGCCCCAAACAGGGAGCATATCAGAATGATTTTTGGAGGATCATCTGACACTAAAGACTGGAGTAATTATGCTGAAAATTTACCTTTGCATCACTGCAATAAATAATATTTTAAATACATTGAAATAGAAAGGTTATTTAAAGTTTTTTTTATAATGTTTTGTAATATTGCATAAAAGACAAAAGAATTAAATAAATATATATATATATATATATTTATGATTGATTAAATTGATTAATTGACTGACATAAAAGAAGAAAGGTGTTTCAGAACTAGATGTTGTAGTTATATCATCCAACATATTTTGATAGCCAGCCGCCATCCTATGGTTGCCTCAAATATCTTACTGCCCTCCTTTATGAACTCAAGGGAATGTGTTGTATTTCTCCTCGAGGTCATTTTGCACCTGTGATCTTCATGGTAGCTGTGGTTCACTACACTTACAGAAAAAAAGAGTATATTAGAGCCAGTGAGTGGGTGAGAGGAAACGAGGGAGTGTATGATTGGGAGCAGGGGAGGATGAGAGAAACACTAGTGGCTCGTTTTCTTAGTGCTGTCGCCAGCATTGATGCTTATGAAAAGGTCGAGTGTGGCGCCACAACCACTGATTACTTTTTTATTTTGCTCTGTTTTGGTCTCCCTCTCTTTTTCTCATTCTGTTTGGGGTCAGTGCAATGTTTTGGATGTTTTTGAAAGGTCTCATGCTCCTCCAGGCTGCAATGATTTAAATAAAAACAATAATAACAGAAATATTGTAAAACAGCATACTATACTATAAATCTGCTTTCTCTTTGAACATATTTAGACATTTTTCTAAAAAAAAAAAAAAGTTTTGAAAGTTATTAAAAAACACTTTGAGATTTAACTAATGGATCGTTTCTTTTAATGTATTTACTAACATGAACATACAATAAGCAATGCATGTATTACAATATTTATTTCAGTATTTATTATATTTGTGTTAACATTAATTAAAATAAATGATGATTGAAATAAATAATGAACTGTTAACAAGCTGAAGCTAGGGTTTTAATAATACATTAGCAATAGTTGAACTATGATTATTAATAAATGCTCTTCAAGTATTATTCATTCTAATGATGTTTACACCAGATGCTGCACGCACGGATAAATCGCTCTAGTGTGTAAATAAACTCATTAACATTTTGAGTTTTTTTCAGACGTCAAATTCACTTTATTCGCGCATCAAATTTACTTTTTACTTCACAATAGACACTGATTCGTGTCATGGGCAGGGCTTCTGTCTGCCCGGTGACTCTAGCTTCATTGCTAAATGGCTAACATTGATTTTATTGCGATAGTAGCTTTATGTGCTTTAGAAAGGCAGAAAAACAGCATAGATTCATTTTCTTTCCTTAAAATAGCAAAAGTGGATTCAGACCAACCTTTAATGCTTTTGCCCCCTGCGCTTTGGACTTTGCCCCCGGATTGTTGCTATTGGTTTAGAACTTCCGATTTAGTTGCCTATGGGAGAAATGACCATGATTAATGAACTGCAGAAAATGGTCAAACCGCTAACTCTACAAACAAGTGTTTTTAGGATTATACAGGGAAAACAAAACAAGCTGTTTTTAATGTCTGAAAGTGAATGGAAGTGAATGGGATCGAAAGTATCGAGCCAAAAAGATTCAAATGGCTGCACCTGCTCGTTTGTGGAGAGTAAGGTGAATAGGAATTGTGCTGTGTTGTTTCATTGATAACAATTGCTTTAATTTATAGATGGCAGCTTAAAGATGTTATTGCTTTCTTAAATCACCTCACTTTCACTTTTGACTAAATTGGTCAATGCTTGCCCTGCCTGATGTTAAACCAGCTGGCTCTGATTATGACCTGATTCTGTTCACGCTTTTATTTACGAGCTTGCTTACGTTGTACTGAGATTTCCTAATGCCCTCTGTTTGAATGCTGAGGTCAAGAGAGCCGCTTAGAGGCTGTTAAACGGGTGACATGAAGCCAGAGCACTTTTGTAATGGTTCCACACCCTAGACAAACACAGTCATCCCAGACCATCCTGTCTTGTGCCGCCTTTAAAAGTTTACCAACACTATGGTTCTTACAATTAGGCCTGTGTGATCTTGGAAAAGGCTGACATTGCAATACTTATTTTTTATGCAGTATAAAATCATTTTACTAAATAACATGAATAGCTCTGTTTGAAAAGAATTTTTTTTTTTTTTTAATAAAAAAAAACAAAGAAAATAGCTTAGCGTAAAGAGATCCGAATTCTGAAATACATCTTTTATGCTTCCCACAGCTGCTTTTATATGAGCAAAAAGACGCTAGCAACAGAAATATTATGAAATATTTTATTGCAATTAAAAAACTAAACATTTTGTTTGAATTATTTAAATGTAAATGATAAAATAATTGCCCAAATATCTTGACATTTTTCTCCTGTATTTTTTGATTAACACAAACAGTTTGAAATAAGAACATTTACTAGAAATAAAAGTCATTCCTAACATCATTAATGTCTTTACTGTTACTTGAGGTCAATTTGATGCTTTCTTGTGAAACTATAATACTATTTATTTTGAAAAAACTTAGTAACCCCAAACTTTTGAAACTAAATATGATCAAGCATACTATTGTCTTTGAACAG
Seq C2 exon
GATTCTGGGATTGTAGTGGAGTCATTCAAGTCGGGTTTTGAACCCCCTGGTGATTTCCCTTTTGAAGACTTCAGTCAGAACATCCAGCGAACAGGGTCAGACAGCACCATTGGGACCCCCAAAACAGAGGGAGGCAAACCAGACCCCAAACACGCAATCAGCAGGACCAAAAACAAACTCTGGCTCTTTGGAAAGAAACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020131:ENSDART00000045038:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.112 A=NA C2=0.691
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF039618=DUF342=PU(3.4=5.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]