RnoINT0061844 @ rn6
Intron Retention
Gene
ENSRNOG00000013798 | Fnbp1l
Description
formin binding protein 1-like [Source:RGD Symbol;Acc:1305386]
Coordinates
chr2:226707574-226708913:-
Coord C1 exon
chr2:226708767-226708913
Coord A exon
chr2:226707778-226708766
Coord C2 exon
chr2:226707574-226707777
Length
989 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
AAGTTGTTTCTTATGTACAGGAC
3' ss Score
5.66
Exon sequences
Seq C1 exon
CAACTACAAGAAATGGATGAACGAAGGACAATTAAACTCAGTGAATGTTACAGAGGGTTTGCAGACTCAGAACGCAAAGTTATCCCCATCATCTCGAAATGTCTAGAAGGAATGATTCTTGCAGCAAAATCAGTTGATGAGAGAAGA
Seq A exon
GTAAGTACTGCGCAGTCGTCTCCGAATCGGTGCGTGCGTGGGGCTGTGCATCTGAGTCAGTGAAGTGGTTCAGGAAAGGAGTGACGTAACGTAAGGAGCCCTTGCTTCTCACTGTACTCTGTATGAGAAGTGGTTCAGGAAAGGAGTAATGTAAGGAACTCTTGCTTCTCACTGTACTCTGTATGAGAAGGCTTGCGTGAGTTAGACTCCTACAAGAGCTTCACTCTAATTCTTATTCTTTATAGAAACTTGCAGCCCTCTCCTTTCCATTATTTTTTCTAATCCAAGATTATAACCTTTAAACTATGTGTTTAAATTATTATTATGCTATTCTAATGAAAGTTTAAAGAGGGATGTGATTAGATTGATCTCATGTTGTCAGATCGATCTGTGTAGGCAGTCTTGAATGCAAGAGTTGATGCTTGAGCTGATCAAGAAACAGTGTAGAATAGTGATCATAAGGAGAAGAAAGAGGGGAGGGCATCAGGAGGCAAGGACACAGCCCAGTCTTGTTCTTGAGAACATAGAAACGTTACAGCTTAGCCAAAGGGTAGCAAAGGGTAGCATATTTCTCAGTAAATGCTGACTGAGTTACAAAGAAGCATGGGCAAGTAGACTCTGACATTCCAAGTGGAAAACAAGAAAAAGAAGTAATATTGGGAGAGTGTCAGATGTGTGACATGTACTTTAGTCTTCACAGCAAGTCATTCAGTCAGTGCTAGCAAAGAGCCTACCTGTAACTAACTGAATCCCCAAATTTAACAAAAAGAAAAAGGCCTTTTAGTTTCTTTAGTTGGGAGTTTCAAAGTGTGTCTGTATGTGTGTGTTGTGTTTTTTCACTTGGGATTGATATATTGAATGCTTATTCCAACATTCAGGGAGAAAGTATTTTCTTTAAGCCTTTGGTGATTACTGTAGAACTTTTTCTTTAAACTTTAATTTTTTTTGAAAGGTAATGTACTGTTAACAAAGTTGTTTCTTATGTACAG
Seq C2 exon
GACTCTCAAATGGTAGTAGACTCGTTCAAGTCTGGCTTTGAACCCCCAGGAGACTTTCCATTTGAAGATTATAGTCAGCACATTTACAGGACCGTTTCTGATGGGACCATCAGTGCCTCCAAACAGGAGGGTGGCAAGATGGATTCCAAGTCCACAGCAGGGAAGGCCAAGGGCAAACTGTGGCTCTTTGGAAAGAAGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013798:ENSRNOT00000019244:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.373
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGAAATGGATGAACGAAGGACA
R:
GGCTTCTTTCCAAAGAGCCAC
Band lengths:
342-1331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]