BtaINT0063747 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008994 | FPGS
Description
Bos taurus folylpolyglutamate synthase (FPGS), mRNA. [Source:RefSeq mRNA;Acc:NM_001024480]
Coordinates
chr11:98506155-98506303:+
Coord C1 exon
chr11:98506155-98506230
Coord A exon
chr11:98506231-98506294
Coord C2 exon
chr11:98506295-98506303
Length
64 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GTGCTGGCTTTGACCCCCAGCAG
3' ss Score
4.71
Exon sequences
Seq C1 exon
CGGTTCCGAGGTGCGCGTCTTGCTCTTCAACTCCACTGGGGACCGGGATTCCGCGGCCCTGCTGAAGCTGCTGCAG
Seq A exon
GTGAGGAACTGGCTGGGGTATGGGCAGCAGGCAGGCCAGCTCGGGTGCTGGCTTTGACCCCCAG
Seq C2 exon
CAGCCGTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008994:ENSBTAT00000032762:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0287516=Mur_ligase_C=FE(13.8=100)
A:
NA
C2:
PF0287516=Mur_ligase_C=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development