GgaINT1013435 @ galGal4
Intron Retention
Gene
ENSGALG00000005051 | FPGS
Description
folylpolyglutamate synthase [Source:HGNC Symbol;Acc:HGNC:3824]
Coordinates
chr17:4893041-4893473:-
Coord C1 exon
chr17:4893398-4893473
Coord A exon
chr17:4893108-4893397
Coord C2 exon
chr17:4893041-4893107
Length
290 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
GATCCCCCCTCTCCCCACAGCCC
3' ss Score
12.31
Exon sequences
Seq C1 exon
TGGCTCTGAGGTGCGGGTGCTCCTCTTCAACGCTACGGGGGACCGGGACACAGCTGCGCTACTGAAGCTGCTGCTG
Seq A exon
GTGAGGTTTTGGGGTGCTGGCGGGGGGATGCTGTCCTTGGGCCCCACTTTGCTGCAGGTGCTGGGAGCCACATGGTGGAGCTGCTGTCCGTCTGTCCTGCTGTCCTGTTGTCTCCCGGCTCAATGCCGCCCTCCTTTCCGAGGGGCTCACAGCCCCAGCTGCAGTCCTAACACCCCCCCATCAAGCCACGCTGGGCTGGGACAGGGCCTGGTGGCATCGTGGTGGCGGTGGTGGGGCTGTCCTGGGAGTCCCCGCATCCCCTGCCCTGCTGATCCCCCCTCTCCCCACAG
Seq C2 exon
CCCTGCCACTTTGACTACGCCGTCTTCTGCCCCAACTTCACAGAGGTGTCGGTGGCTGCTAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005051:ENSGALT00000008101:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0287516=Mur_ligase_C=FE(27.8=100)
A:
NA
C2:
PF0287516=Mur_ligase_C=PD(21.1=82.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGAGGTGCGGGTGCTC
R:
CTGAGTTAGCAGCCACCGAC
Band lengths:
140-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]