HsaINT0065765 @ hg19
Intron Retention
Gene
ENSG00000136877 | FPGS
Description
folylpolyglutamate synthase [Source:HGNC Symbol;Acc:3824]
Coordinates
chr9:130572310-130573290:+
Coord C1 exon
chr9:130572310-130572385
Coord A exon
chr9:130572386-130573223
Coord C2 exon
chr9:130573224-130573290
Length
838 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TCTTTCCCTTGGCCTTCTAGCCC
3' ss Score
9.03
Exon sequences
Seq C1 exon
TGGCCCCGAGGTTCGAGTCTTGCTCTTCAATGCTACCGGGGACCGGGACCCGGCGGCCCTGCTGAAGCTGCTGCAG
Seq A exon
GTGAGGGGCCAACTTGGGGGTGGGCGGCAGGCAGTCCTGAAGCCCTGGGTCTGGCGGTGTGACCCTGGGGGGTGCCAATCCCCTCCCCCTTGAGTTGTATTGAGGATTAGATGTGACAAGGTGCCTGTGCTGGTTCTGCCAGGTGCTGCAGGGCCGTGGGGAGGCCAGTCATAGGTCATTACTCATATTCCCGCGTGTCTAGACTCAAGTCCAGGCTTAAGAGGAGGGCCAGATCGTGGCTAAAGGTGTAGACTCTGGACTCGCTTGTCATGCCCCTTTAGGCACTAGCATATCACCCTGGACGAGAAGCGGCATTTCCCCGAGCCTCAGTTTGCCTCTCCGTAAAATGGGGTTGCTGCTAGGGGCACCCGCTTCTCAGGTTTGGTTGAAGGAGTCATTGGGCCTTTCTCTGCTTGGGGAAACTGAGGCTGCCCAAGCTGTCAGGGCTGAAGTGGCCCCTAGGTATCATCTCCCATTTCACAGACCAGGAGGCTGAGGCTGTATCCAGAACCTCTCCCATTTACCCACAGCCTTTTTCCAGCCTGGATTTGGGGCCCCCTCACTATCTGAGTGACCTTCAGCAAGTCCCCTTGCCCTGTGGCCACTGTTCCCCTGTCTGTACAGTAGGTTGGGGCTTCGCTGCTCAGGCCACAGGCCAGGCAGGGTATACTGAGGCAGATGGGGGCAGGGTGCTGAAGTACCTTGGCTAGGTTTATACAGCATCATTCTAGTTGTCAGGGAGGCTGCATCTCCAGAGATGTGGGCGCAGGGGGCCATATGGAAGTTGGTGGACATCCTTTCGGGGGTCTGACACCAAGTCTTTCCCTTGGCCTTCTAG
Seq C2 exon
CCCTGCCAGTTTGACTATGCCGTCTTCTGCCCTAACCTGACAGAGGTGTCATCCACAGGCAACGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136877-FPGS:NM_001018078:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.183 A=NA C2=0.130
Domain overlap (PFAM):
C1:
PF0287516=Mur_ligase_C=FE(30.9=100)
A:
NA
C2:
PF0287516=Mur_ligase_C=PD(12.3=43.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)