MmuINT0065771 @ mm10
Intron Retention
Gene
ENSMUSG00000009566 | Fpgs
Description
folylpolyglutamyl synthetase [Source:MGI Symbol;Acc:MGI:95576]
Coordinates
chr2:32684750-32685389:-
Coord C1 exon
chr2:32685314-32685389
Coord A exon
chr2:32684817-32685313
Coord C2 exon
chr2:32684750-32684816
Length
497 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
GTCTCCCCTTGGTCTCCCAGCCC
3' ss Score
7.47
Exon sequences
Seq C1 exon
AGGGTCCGAAGTACACATCTTGCTCTTCAACTCTACTGGTGACAGGGACTCTGCTGCCCTGCTGAAGCTGCTGCAG
Seq A exon
GTAAAGGACCCACCTGGAGGGTGGGCAGGCGGCAGGTGGCCCTGGCTCTGGTGGGCGCCGAGGCCTGGACGTCCTCACCTGTAAATGGAGCCAATCCCTGTCATGCTTTGCTTGCGGGGCTGCGTCAGTGCTAGGCTGCCAGGGCCAGAGTGGCTCCTCGAATCACTTCCCACTTCAGGACAGGAGGCTGGAGTGGTTCATATCCAGAGACTACTCCAGCCTGGGTTTGGGGCCTGCTCCTCAGCTCGGCTGCCCTAAGTAGGTACCACCTGACTCTGCACTCAGAACAGTACATGTATGCACGAGCTTCCTGTACAGCAGGCAGTGCACTGAGGCAGATGGGGCAGCTGTGGAGGGCTGTGGCTCGTTACTACACATCCCAGTGCAGGGGCGGTTGTCTCCAGAGGTGTGGCCTGGGGAGTATTTGGAAGTCAAGTGGGGGTGAGGGACATCTTTCAGAAGACTGATACTAATAACGTCTCCCCTTGGTCTCCCAG
Seq C2 exon
CCCTGCCAGTTTGACTACGCTGTCTTCTGCCCCAACGTGACAGAGGTTTCATCCATAGGAAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009566:ENSMUST00000028148:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0287516=Mur_ligase_C=FE(31.2=100)
A:
NA
C2:
PF0287516=Mur_ligase_C=PD(11.2=39.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types