DreINT0069631 @ danRer10
Intron Retention
Gene
ENSDARG00000044809 | fpgs
Description
folylpolyglutamate synthase [Source:ZFIN;Acc:ZDB-GENE-040426-2781]
Coordinates
chr21:6026290-6026521:+
Coord C1 exon
chr21:6026290-6026365
Coord A exon
chr21:6026366-6026454
Coord C2 exon
chr21:6026455-6026521
Length
89 bp
Sequences
Splice sites
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
3' ss Seq
TGATGCTTTCTGTGTTTCAGCCC
3' ss Score
9.41
Exon sequences
Seq C1 exon
AGGTTCAGTGCTGAGGGTTCTCTTATTCAACGCTACAGGAGAGAGAGACTGTGCCGCCATGCTCAAACTGCTGGCA
Seq A exon
GTGAGTTATTCATTCATTTTATGAATCGTTTGACTCTTGTGAACCACATCGAGATTCAGTTTAATATGCTGATGCTTTCTGTGTTTCAG
Seq C2 exon
CCCTGTCATTTTGACTTTGCTGTGTTTTGTCCAAACATCACAGAGGCCATCGCGTCCTGTAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044809:ENSDART00000141607:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0287516=Mur_ligase_C=FE(28.7=100)
A:
NA
C2:
PF0287516=Mur_ligase_C=PD(18.4=69.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTCAGTGCTGAGGGTTCT
R:
CTGCATTACAGGACGCGATGG
Band lengths:
143-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]