RnoINT0062286 @ rn6
Intron Retention
Gene
ENSRNOG00000050780 | Fpgs
Description
folylpolyglutamate synthase [Source:RGD Symbol;Acc:1587713]
Coordinates
chr3:11720392-11720959:-
Coord C1 exon
chr3:11720884-11720959
Coord A exon
chr3:11720459-11720883
Coord C2 exon
chr3:11720392-11720458
Length
425 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
ATCTTCCCTTGATCTCCCAGCCC
3' ss Score
8.19
Exon sequences
Seq C1 exon
TGGGCATGAAGTACACATCTTGCTCTTCAACTCCACTGGTGACAGGGACTCTGCTGCCCTACTGAAGTTGCTGCAG
Seq A exon
GTAAAGGACCCAGCTGGAGGGTGGCACTGAGGCCTGGATGTCCCCAGCTGATCCCTGTCACACCTTTGCTTGGGGAACTGCATCGGTTCTAGGCTGCCGGGGCCACAGTGGCTTCCGAGCAGGAGGCGGAAGTGGTTCGTATCCAGAACTACCCCAGCCTGGGTTTGGGCCTGCCCTCCATCGAGGCTGCCCTGAGTAGCCACCCCCTGAACCTTCATTCAGAGCAGTACACGTATGCAAGTACTCTGCACTGAGGTAGATGGGGTGGGTGAGGAAGGCCTGTGGCTCGTTACTACAATATCCCAGTGCAAGGGTGGACTTCTCCAGAGGTGTGGCCTGGGGGGGGGCTATTTGGAAGTCAAGTGGGGGTGAGGGACATACTTTCAGAAGGCTGATACTAAGTACATCTTCCCTTGATCTCCCAG
Seq C2 exon
CCCTGCCATTTTGATTACGCTGTCTTCTGCCCCAATGTGACAGAGATTTCATCCATAGGAAACGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050780:ENSRNOT00000070916:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0287516=Mur_ligase_C=FE(30.1=100)
A:
NA
C2:
PF0287516=Mur_ligase_C=PD(14.5=52.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]