BtaINT0064421 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008926 | FUBP1
Description
Bos taurus far upstream element (FUSE) binding protein 1 (FUBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076846]
Coordinates
chr3:66975767-66976071:+
Coord C1 exon
chr3:66975767-66975869
Coord A exon
chr3:66975870-66975970
Coord C2 exon
chr3:66975971-66976071
Length
101 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTTGTTTCATTGTTTTGAAGATG
3' ss Score
7.35
Exon sequences
Seq C1 exon
GTCCCCATTCCAAGATTTGCTGTTGGCATTGTAATAGGAAGAAATGGAGAGATGATTAAAAAAATACAAAATGATGCTGGTGTTCGAATTCAGTTTAAGCCAG
Seq A exon
GTGAGTACTTATGTTTAATTTTCTAAGCATTGCTGGCAATTTCTTTTAACACTCATTAATTTAATGTTAAATTAATCCAATTTTGTTTCATTGTTTTGAAG
Seq C2 exon
ATGATGGAACAACACCTGATAGAATAGCACAAATAACAGGACCTCCAGACAGATGTCAGCATGCTGCAGAGATTATTACAGACCTCCTTCGAAGTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008926:ENSBTAT00000011751:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.343 A=NA C2=0.824
Domain overlap (PFAM):
C1:
PF0001324=KH_1=FE(54.0=100)
A:
NA
C2:
PF0001324=KH_1=PD(39.7=73.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCATTCCAAGATTTGCTGT
R:
TGAACACTTCGAAGGAGGTCTG
Band lengths:
202-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]