HsaINT0066532 @ hg38
Intron Retention
Gene
ENSG00000162613 | FUBP1
Description
far upstream element binding protein 1 [Source:HGNC Symbol;Acc:HGNC:4004]
Coordinates
chr1:77964062-77964356:-
Coord C1 exon
chr1:77964254-77964356
Coord A exon
chr1:77964163-77964253
Coord C2 exon
chr1:77964062-77964162
Length
91 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTTGTTTCTTTGTTTTGAAGATG
3' ss Score
8.2
Exon sequences
Seq C1 exon
GTCCCCATTCCAAGATTTGCTGTTGGCATTGTAATAGGAAGAAATGGAGAGATGATCAAAAAAATACAAAATGATGCTGGTGTTCGCATTCAGTTTAAGCCAG
Seq A exon
GTGAGTACATATAATAATCTTGTAAGTGTTGGCAGCAGTGAGTTTTGACATACATTTATTGTTTAATTAATTTTGTTTCTTTGTTTTGAAG
Seq C2 exon
ATGATGGGACAACACCCGAAAGGATAGCACAAATAACAGGACCTCCAGACCGATGTCAACATGCTGCAGAAATTATTACAGACCTTCTTCGAAGTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162613:ENST00000294623:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.314 A=NA C2=0.776
Domain overlap (PFAM):
C1:
PF0001324=KH_1=FE(54.0=100)
A:
NA
C2:
PF0001324=KH_1=PD(39.7=73.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCATTCCAAGATTTGCTGT
R:
TCTGCAGCATGTTGACATCGG
Band lengths:
172-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development