GgaINT0039160 @ galGal3
Intron Retention
Gene
ENSGALG00000008939 | FUBP1
Description
NA
Coordinates
chr8:19599578-19599858:+
Coord C1 exon
chr8:19599578-19599680
Coord A exon
chr8:19599681-19599757
Coord C2 exon
chr8:19599758-19599858
Length
77 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
ATCATTCATTTTTATTCTAGATG
3' ss Score
8.36
Exon sequences
Seq C1 exon
GTTCCAATACCACGGTTTGCTGTAGGTATTGTAATTGGAAGAAATGGGGAGATGATAAAAAAGATACAGAATGATGCTGGTGTTAGGATCCAATTTAAGCCAG
Seq A exon
GTTGGTAATAAATCTGTATGTTTTTGTGAATGAGTTTAATGGATTGCATATACTGGAATCATTCATTTTTATTCTAG
Seq C2 exon
ATGATGGAACAACTCCAGATAGAATAGCCCAGATCACGGGGCCTCCTGACAGATGTCAGCACGCTGCAGAAATTATTACAGATCTCCTTCGAAGTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008939:ENSGALT00000014525:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.324 A=NA C2=0.882
Domain overlap (PFAM):
C1:
PF0001324=KH_1=FE(54.8=100)
A:
NA
C2:
PF0001324=KH_1=PD(40.3=73.5),PF0395812=Secretin_N=PU(13.2=47.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAATACCACGGTTTGCTGT
R:
GCAGCGTGCTGACATCTGTC
Band lengths:
168-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]