BtaINT0064432 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008926 | FUBP1
Description
Bos taurus far upstream element (FUSE) binding protein 1 (FUBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076846]
Coordinates
chr3:66972852-66973065:+
Coord C1 exon
chr3:66972852-66972901
Coord A exon
chr3:66972902-66972993
Coord C2 exon
chr3:66972994-66973065
Length
92 bp
Sequences
Splice sites
5' ss Seq
TTAGTAAGT
5' ss Score
7.79
3' ss Seq
ATTTTCTTTTTTCTTACTAGTAA
3' ss Score
8.02
Exon sequences
Seq C1 exon
GTCTGTAATGACAGAAGAATACAAAGTTCCAGATGGAATGGTTGGATTTA
Seq A exon
GTAAGTAATCTAATTTTTTTGACGCTTTGAAAAGACATAGTCAAAATACACTTTAAAACCTTTCAGCAAATAATTTTCTTTTTTCTTACTAG
Seq C2 exon
TAATTGGCAGAGGAGGTGAACAGATCTCACGCATACAACAGGAATCTGGATGTAAAATACAGATAGCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008926:ENSBTAT00000011751:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.519 A=NA C2=0.773
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PU(20.6=72.2)
A:
NA
C2:
PF0001324=KH_1=FE(38.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAAGAATACAAAGTTCCAGATGG
R:
CAGGAGCTATCTGTATTTTACATCCA
Band lengths:
112-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]