HsaINT0066544 @ hg38
Intron Retention
Gene
ENSG00000162613 | FUBP1
Description
far upstream element binding protein 1 [Source:HGNC Symbol;Acc:HGNC:4004]
Coordinates
chr1:77966884-77967098:-
Coord C1 exon
chr1:77967049-77967098
Coord A exon
chr1:77966956-77967048
Coord C2 exon
chr1:77966884-77966955
Length
93 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
ATTTTTTTTTTTCTAACTAGTAA
3' ss Score
7.5
Exon sequences
Seq C1 exon
ATCTGTAATGACAGAAGAATACAAAGTTCCAGATGGAATGGTTGGATTCA
Seq A exon
GTAAGTAACTTGATTTTTAAAGTTTTGAAAACATGATCAAAACATACTTTAGAATCTTTCAACCAAAAAAAAAATTTTTTTTTTTCTAACTAG
Seq C2 exon
TAATTGGCAGAGGAGGTGAACAGATCTCACGCATACAACAGGAATCTGGATGCAAAATACAGATAGCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162613:ENST00000294623:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.492 A=NA C2=0.560
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PU(20.6=72.2)
A:
NA
C2:
PF0001324=KH_1=FE(38.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAAGAATACAAAGTTCCAGATGG
R:
AGGAGCTATCTGTATTTTGCATCCA
Band lengths:
111-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development