RnoINT0062945 @ rn6
Intron Retention
Gene
ENSRNOG00000043370 | Fubp1
Description
far upstream element binding protein 1 [Source:RGD Symbol;Acc:1591892]
Coordinates
chr2:257432840-257433054:+
Coord C1 exon
chr2:257432840-257432889
Coord A exon
chr2:257432890-257432982
Coord C2 exon
chr2:257432983-257433054
Length
93 bp
Sequences
Splice sites
5' ss Seq
TTAGTAAGT
5' ss Score
7.79
3' ss Seq
CCTTTCTCTCCCTTAACTAGTAA
3' ss Score
7.51
Exon sequences
Seq C1 exon
ATCTGTAATGACAGAAGAATACAAAGTTCCAGATGGAATGGTTGGATTTA
Seq A exon
GTAAGTAACATTAATTTTTGAGTTTTTAAGACAAGCCATACTTTCAAAATTTAGAGTAAATAATAACTTCTCTCCTTTCTCTCCCTTAACTAG
Seq C2 exon
TAATTGGCAGAGGAGGTGAACAGATCTCACGCATACAGCAGGAATCTGGATGCAAAATACAGATAGCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043370:ENSRNOT00000066199:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.613
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PU(20.6=72.2)
A:
NA
C2:
PF0001324=KH_1=FE(38.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAAGAATACAAAGTTCCAGATGG
R:
AGGAGCTATCTGTATTTTGCATCCA
Band lengths:
111-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]