BtaINT0067432 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015144 | GMIP
Description
GEM interacting protein [Source:HGNC Symbol;Acc:HGNC:24852]
Coordinates
chr7:3616193-3616816:+
Coord C1 exon
chr7:3616193-3616300
Coord A exon
chr7:3616301-3616735
Coord C2 exon
chr7:3616736-3616816
Length
435 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TCATTCCCCATCCTTCCCAGCCC
3' ss Score
6.65
Exon sequences
Seq C1 exon
AGCCAAATGTCATTGCAATATATCTACCTCCTGTTTCTGGAGCACGACCTCAGCCTAGGAAACCTGGCCATGGAGACACTGGCCCAGCAGAAAAGAGACTACTACCAG
Seq A exon
GTGAGGGGGCCCCTCATGCATCATTTCTCTACAAGCATCCGGGGAGGCATCATTACCATCAGCACCATTTGCTGATGAGGAAGCCGAGACCAGGGATGCTGCGGAACTTGCCCAAGGTTACCCAGCAGAGATTCAAACCAGGCTTCCTGTGTGATTACAAAACTGCTTTTGTTTGTCCGCGGGCCATGGGGCAAGATGCTGAGTGTACTCAGGAAGAGAGCCTTGGCATCCCCAGCTCCAGACCCAAAGGATGGAAGTGACCACCGAGATTCTTTGCGGAGAGGCCACGGGGGTAGGGGAGGGCAGATCTGGGGGAGAAGACCCAGGAGAGGGTGTAGACCTAGAAAAGGGTCCAGAGGGTGAAAGACGTGTGGCCCCGGTGAATGGGATGACCAAGCAACCCAGGCAGCATTCCTCATTCCCCATCCTTCCCAG
Seq C2 exon
CCCTTGGCTGCCAAACGGACTGAGATTGAGAAGTGGCGGAAGGAGTTCAAGGAGCAGTGGATGAAAGAGCAGAAGCGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015144:ENSBTAT00000020147:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAAATGTCATTGCAATATATCT
R:
CCGCTTCTGCTCTTTCATCCA
Band lengths:
186-621
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]