RnoINT0065865 @ rn6
Intron Retention
Gene
ENSRNOG00000027257 | Gmip
Description
Gem-interacting protein [Source:RGD Symbol;Acc:1565577]
Coordinates
chr16:21357927-21360151:-
Coord C1 exon
chr16:21360044-21360151
Coord A exon
chr16:21358008-21360043
Coord C2 exon
chr16:21357927-21358007
Length
2036 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
ATGCCATCCCCACCCCACAGCCC
3' ss Score
7.73
Exon sequences
Seq C1 exon
AGCCAAATGCCACTCCAGTACATCTACACCTTGTTTCTGGAGCATGACCACAGCCTGGGTGCCCTGGCCATAGACACCGTGGCCCAGCAGAAGAGAGACTACTACCAG
Seq A exon
GTAAGCCTCCACTCCTCCCCATCTCCCAAGGCCACCTCAGGGAGCCTCACTGCAGTCTCACTCGGGAGGAAGCTGGAGCCTAGAGATGCTTAGGATATACTGTCCAGTGTTCCTACACCGAGATTCAAGCCCAGCTTTCTGTGAGACTACAAAACACACACAGAGAATGGTGCTTTCATTTGAGAAAGTCAGGGAAGATATTTCATTTGTGGGTGTATTAGGGAAGTCTCTGCCCGAAGAATTACATCCCCAGTCCCGAGTCTTAAAGTTTTTCAGCTTAGAAATACCAGTTTCACAGGGCATAGTGGTGCATGCCTTTATCCCAGCACTTGAGAAGCAGAGGTAGGTGGATCTCTGAGCTCGAGGCCAGCCTGGTCTACATGATGAGTTCTAGGACAGCCTGAGACCCTGTCTTGAACAAAGCCTAGCATGGCGGTACACACCTTTAATTCCAACATGGTGGAGCCTAGGAAGGTAAGAATCTCTGAGGTAGTGTCCAGCCAACATCATATAGTAAGACTTATCTTAAAAACAAACAAACAAACAAACAAAAAGATTGGTTTCAGGGAGAGCAAGATAGCTCAGAAGGTAAAGGTGCTTGTAGCTGGTCTTCGCTACATAGTAGGTTCTTCTTTCTCCCACCCTTGACTCCCAGAGCCCTTGCACCCCAACCCTGTTTTTTGCCCCTAACACTAGTTAGCAAAGAAAGAAGCATAGATGGGGAAGAGAGAGATACAGATCCCAGAAATTAATACAGATCCCAGAAAGAAATTATTTCTTTCCTTTTGTTTCTTCTTTGACCACAACTACTGACCAACCACAACCAACCCCTATTACAAGCAGCAACCACAAACCCCATTTTTTGGGGCACTAGCATTTATATACCATTGAAAAGTTCCCATAATTCCAAGCATCATACAGACGAAGAAATTATCTGCAGATGGCAAAACCACATCTCTCCTAGAGCAGGAGGCAAATCAGAGTCAGCTGCTGGGACAGTCCGGCATCCTCACACCTGAGATTAAAATGAAAGCACATTCTTGTAATACTTCTGTGTTTCTTAAAGAAACCAAGATTCTAGAATCCTCACTTTAGGTGCTTGCTGCACAAGTCTGAAGACCTGAGTACAATCCCTGAAACCTGCATAAAGATAGGAGAAAGCCAACTTTACAGTGCTGTCCTCTGAGCTCCACAGGCATGGCCTGGCCTGAGTGCCCTCAGACATCAGCATAATAATAAGTAGATTTTTTTAAAAGGAAGTGCTGGAAATAGCACAGTAGTAGAATACTTAGCCAGCAAGGCTATGGGTTCAAATCCCCAGTAACAAAAAGAAAAAGAACCCATCGAGTTAGCTCATCCAGTGAAGGTCCTTGTCACCAAGCGTGGTGACCTGAGTTTGATCCCTGGAATGCACATGGAGGAAGGAGAGTCCTGTCCTCCACAGACGTGCCCCGGCATGAATGTCTCTCCAAAAATACACAAATACAAACTAAAGAAATAAAAACTTAAAAGGAAGCTAGAAAGACTTTGTGTTTGGGAGCACGTGCTGCTCTTGCAGAGGACCTGAGGTTTTGGTTCCAAGCACCCATGACGGGCAGTTCACAGCCACCTGTAACTCCAACTCCCTGGGGATCCGATGCGTCCTTCTGTCTTCCATGGGTATGCACACCGATGCGGGCACGCCTGTACACTATGCACAACTTAAAATAATAAAAAATTAAAACGTTTTACATTGAAAAAGTACACCAATAGGATTGTCAGGATGGGTGTTTCCTCAGGAATTAAAACCTCAGGATGTCTAGCTTCCTGACAGAAAGATGGGGCGATCACACAACTTTCTGCTCATGTACTTGGACTTAGGGTAGAAAAGGCCTGGTTAAAAAAAACAAAACAAAACAAACAAACAAACAAACAAAAAAAAAAACAGATTCAGAAAGGGTTTTGGGTCTGGGGTATCTAAGGGGATTGGGCAGGAAGCAGAACAGATGGGGAGGCCTGCAACTGCTTTCCCTACCCATGCCATCCCCACCCCACAG
Seq C2 exon
CCCCTGGCGGCCAAAAGGATGGAAATTGAGAAGTGGAGGAAGGAATTCAAGGAACAGTGGCTGAAGGAGCAGAAGCGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027257:ENSRNOT00000039607:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.037
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]