HsaINT0069919 @ hg38
Intron Retention
Gene
ENSG00000089639 | GMIP
Description
GEM interacting protein [Source:HGNC Symbol;Acc:HGNC:24852]
Coordinates
chr19:19638402-19640192:-
Coord C1 exon
chr19:19640085-19640192
Coord A exon
chr19:19638483-19640084
Coord C2 exon
chr19:19638402-19638482
Length
1602 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CCATCCCCAACCCTTGCCAGCCC
3' ss Score
3.34
Exon sequences
Seq C1 exon
AGCCACATGCCTCTGCAGTACATCTACACCCTGTTTCTGGAGCACGATCTCAGCCTGGGAACCCTGGCCATGGAGACAGTGGCCCAGCAGAAAAGAGACTACTACCAG
Seq A exon
GTGAGGGGGGCAGGGTGGAATGTTACAGAGGTCACCCTGCTATCCTGCTGTCCTTCAGGCCTGATCCCCTCGTTTCCCAGCAAGCTGGGAGGAAGGCACCACTACCAACGTCGCCATTTCATTGATGAGGAAGCTGAGGCCCGGGGATGCTTGGGAACTTGCCCAAGGTTACCCAGCAAAGATTCAAGCTGGGCTTCCTGTGCAATTGCAAAACTTCACTTTACTTTTTTTCTTGAGACAGAATATCTTGCTCTTTTGCCCAGGCTGGGGTGCAATGGTGCGATCTCAGCTCACTGCAACCTCCGCTTCTTGGGTTCAAGCAATTCACTTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGCCTGCCACCACGCCCGGCTAATTTTTGTATTTTTAGTACAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCCAACTCCTGACCTCAGGTAATCCACCTACCTCAGCTTCCCAAAGTGGTGGGATTACAGGCGTGAGCCACCACGCCCAGCCAAAAACTTCGTTTTTGTTTGTGGGGAGGGGAACGAGGTGCTGAGTGTTCTCAGGAGGAAAGCCTTGGTGTCTCTGCTTCCAAGCAGAAAGGATGGGGTGACTACATGAGACTTCTGGACTCAGGGGTCGGGGAGAGCAGGTCTGGAGAAGACCCCAGGAGGAGAATACTGACTCAGAAAAGGGTCCAGCCTGGCACGGTGGCTCATGCCTGTAATCCCAGCACTTCTGGGGGCCAAGGAGGGAGGATTGCTTGAGCCCAGGAGTTTGAGACCAACCTGGGCAACATAGTGAGACCCCCTGTCTCTACAAAAAAAAAAAAAAAGTTTTTTAATTAGCTGGGCCTGGTGCACATGTCTGCAGTGCTAGCTACTAGGAGGCTGAGGGTGGAGGATTGCTTGAGGCCAGGAGTTCGAGACTAACCTGGGCAACATAGTGAGATCCCTGTCTTTATCTACCAAAAAAAATTTATTTATTTATTTTTTTTTTTGAGACAGAGTCTCACTTTATCATCCAGGCTGGAGTGCAGTGGCATGATCTCAGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGGTGGGACTATAGGAGTGTGCCATCACATCTTTATAATTTTTGTATTTTTGTAGAGACGGGGTTTCACCATGTTGGTCAGGCTGGTCTTGAACTCCTGGCCTCAGGTGATCTGCCCACTTTGGCCTCCCAAGTGCTGGGATTAAAGGCATGAGCCACTACACCTGGCCAACCAAAAAAAAAAAAAAAAAGAAGAAATTGTTTTTTAAATTAACTAGGCCTAGTGCACATGCCTGTAGTCCTAGCTACTGAGAGGCTGAGGCTGGAGGATTGCTTGAACTCAAGAGTTCAAGTTCAATGCTGCAGTGAGCCATGATTGCCCACTTGCACTCCAACCTGGGCAACAAGAGCAAAACTCCGTCTCGAAAAAAAAAAAAATAGAGTCCAGAGGTGGCAAAGCACATGGCGCAGGAATGGAAGGACTGGGTGGCTGCTTCTGGGTTGGCCCTAAGGCAGCGTCTCCATCCCCATCCCCAACCCTTGCCAG
Seq C2 exon
CCCCTCGCCGCCAAACGGACTGAGATTGAGAAGTGGCGGAAGGAGTTCAAGGAGCAGTGGATGAAGGAGCAGAAGCGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000089639:ENST00000203556:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTCTGCAGTACATCTACAC
R:
CATCCGCTTCTGCTCCTTCAT
Band lengths:
182-1784
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development