BtaINT0067834 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015286 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr11:95871921-95875156:-
Coord C1 exon
chr11:95875010-95875156
Coord A exon
chr11:95871981-95875009
Coord C2 exon
chr11:95871921-95871980
Length
3029 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
GGGTGGGACTTTGATCACAGACC
3' ss Score
2.34
Exon sequences
Seq C1 exon
GTGACCTCGAGGGCCAGGCAAGACCCCGAGTACCAGCTTCCAGCTGTGGAGGGAATACCAAACGGAGAGATGGGGGCAGCCACGGATCTGGGGCAGCTACAGAAGGAAAAACAGGACTTGGAGCAGCAACTTCTAGAGAAAAATAAG
Seq A exon
GTGAGGATGCTTCACCTCAGCTGTTTATGTCTCCTTTCCCATCTTTGTGCCTAAAACCCTCCAGCCCCTTCTCCAGGCTTTGTGCTGATGCCCCTGGGCCGCGCTTGGGGGCGGTCTTACCTCCCATTAGAAGGCCTTCCTTCTGGCTCTTCTCTGCTTGCTTGCCTCGTGCATGGCCCTCTGCTTTCTCACTCCACAAGTCGTCTCCAGCCCTGACCTGAGGTGGCGTCCGGAGTGTCAGGGCTGGGGCAGTAGCAGGCCTCGGTGTCCCCGCCCCCTCTGCCCTCGCCAGCCGGTCTTAGCCAGTCCCCTGGCCTCTGCACCTTCTTCTCCAGCTGTGAAATGAGAGCGCTGATGCTTGCCTTGAAGCGGTTTGGGGGTTTTAGGGGGCGGGTATTGGGTGATGAATTGAAACTGTTAATTTCCTGTAAGTTTTCTGGTATTTGATAGAGGCTTAATAAATGTCATGATTCCACCCATCCTGCCTGGCCTCTGCACCTGTAAATGCAGGGGCTCATTTGAGCCTGGGTTTACTGTGTCCTGTGAAGTTAATGTACGGCCTGGTTAGTGCTCTGGCCTGAAATTCTGCCTGCAGATCGTGTGGTTGCTGTTTAACACGGGAAAAGGGGTTCCTTCTTTCTCTTCCCCGCCCCCACCTCCCTCCCTCCCTCGCTCCCTCCCTGTCTCCCCCTTCCCCTCCCCACACCCACTGATCTCTTCTGGGCAATACAGACACGCACACACTGTGTGTCCCCGGGCCCTGCCCTCACTCAGCTTCTCCAGGTCACACTCGCATCCGTGGTGATCTCACCCGTCCTGTGTGCTGCTGGCACCTTACCACGCTTCCAGTCCAGACAGCGCCCGTGAACTCAAGACTTCTGTATCTACCGTATCTCTCTGTGTCAGTGTCTGAAAGGCAGCTGAAATCGGAAACATTCAGAGCCAGACTTCAGACTGACCACACTTTCTAGCATCCGCTGCCATCTTTTCTATCTCAGGAAGTGGCCAGAACCTTGCAGCCATCCCTGACCCCCTGTTTCTCTCACAGCCAATGTCCAGATCATTAGGAAATCCCTCGTGCTCTCCCTTCAAACTATACGCGGAAGGAGCTGCTTCTCCTCCCGCCCCTGCTGCCACCTGCTACCTGGTGACCACCCTGTCTTCCCTGGAGGACAGGGATGGGCTTCTAACTGGTTCCCCTGTGCTTGTTTTTTCCAGCGCTCTGATGACTCACTGTTCCCATAAAAGCCCAAGTCCTTACGGTGGCTGCAAAGCCTGAGTGGTCTGGCTCCTTACTGCCCTTCACCCCGCACCCTCTGAGTGGTCTGGCTCCTTGCTGCCCTTCACCCCGCACCCTCCGCTTCCCCTGCATTTCCTCACGTGCAGCAGCCTCGCCTTTCTGTGAATCCCAAGCGCCCTCCCGCCTGGGCCCTTGCACTTGCTGAGCCTTCTGTCTGGAAGATCCTCCCCCAGTCCCCTGGCCTCCTCCGTGGTGTCATTTTCTCAGTGAGGCCTCCCCTGCTGCTCTGCCGACCCTCCCCACCAGAACTCCTGTCCCCCCACCTTCCTCTTTTTCTCCAGGCCTCTTATACCTTGTGATACACTGTAGATTTGCTGGTTAACTTTTTCCCTCCAGAGGGCAGACATTTTTTCTTTCCTTTTTCTTCCCCCTTTTTTTTTTTTTCGCTGTTTCCTCAGTCTCTAGACCAGTGTAGAGACTCAGTATTTGTTGAGCAAATTAATGAATGAGTCAAAAACCTAGAAAATCAAGTAACATAAAATAGCAAGTGTACTTTTGGGGGAATGCCCAGCCCCGTGGTCAACCAGAGAATACACAATGAAACAGAATCTCACCATTCTGTCAGTGAGGTGTTGGAGGCAGTGTGACGTGCTTCACAGGAGCTGGAGACGCTTACACAGTCCCCAGCCCAACCATCTTGTTCTCTAGAGGACTGTGGACATACCACTCTTGAGAAAATGAAGCTTATTACAGCTTTGTTTAAACATGGAAACTCAGGGAATTCCCTGGCAGTCCGGTGGTTAGGACTTGGCGCTTTCACTGCCATGCCAGTGGTTTCAGTCCCTGGTCAGGGAACTAAGGTTCCACAGACCAGGCAGTGTGGTAAAAAAAAAAAAAAAAGGAAATTTGGCTATATAAGAAGACATGGGGCATCCCCTAGAGTTACTGTCACATTAAAAGTTATTATTAGGAAAACTAAAGCTGTGGAAACTCTGATAAATGCAAAATACTATTCAGAGTTCTAGCTATTCAGTGCAAGAATGGTGACATGGGCTAGAAGTTCATAGGAAAAACTCTTTTTGATATGTTAGAGTTGTGAGGTTTTGGAGAAATTTTTATTTAAAATTCTTCCCTGTATTGTTTACACAGTAAATGTTTTCATTGGAAAACAAAGTTCAGCCTTTCTGGTTATTAATGGAATGTGTAATAAATTATATTTAAGGCCTGTAATACTAATCCTTAAACTCACCAAAAATAGGAAAATAAATGAAAGCTATAAAACCCAGCGTTGTTGGGTTATGCCAAAAAGCTGTGATCTCTTACACTGTTCCAGATCAGCACTGAGAATTCTTACAGTATTCTAGGAGATCAGTGGTGGTGGTGAGAACTGTTCAGTTTTGGCCCAGGTATCCTCTTTTGGGGTGATAGCACGTAAATATAATTCTGAAGGACAGAATGTACTATGCAGAGGCATTTTGAGCTCTGCCACCTACAGGGGCAAGTGCCTGAAGCAGTCCTGAGGACCCAGGCCATAGTGGGGGCAGCACTGGGCCGTGGCCCGGCAGGGCCCAGAGAGCAAGTGCGTGCAGAGCAGCAGCATGTGAGGGGAGAGGCCACGGCGGCGGGTGTGTCATAAGCACGAGCCTCTCAGGAGACGAGGCAGGGGCATCTGACAGGTGTATGCGGACCCAAGGGGTTTTCTGTCTGTGCTGTGGTCCTTGGCACCTTAGAGATGGTGAAACGTGCATTTAATGGATGGCTTTTTGTGGGGGTGGGACTTTGATCACAG
Seq C2 exon
ACCATAAAGCAGATGCAGCAAAGAATGCTGGAGCTCAAGAAGACTCTGCAAAAGGAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015286:ENSBTAT00000020327:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.959 A=NA C2=0.200
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development