HsaINT0070371 @ hg19
Intron Retention
Gene
ENSG00000136935 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:4424]
Coordinates
chr9:127644789-127650675:-
Coord C1 exon
chr9:127650532-127650675
Coord A exon
chr9:127644849-127650531
Coord C2 exon
chr9:127644789-127644848
Length
5683 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TGGGGTGGGGCTTGTCGCAGACC
3' ss Score
3.74
Exon sequences
Seq C1 exon
GTGACCTCGAGGGCCATGCAGGACCCTGTGTTCCAGCTTCCAACTGCAGGAAGAACACCAAATGGTGAGGTTGGGGCCATGGATCTCACACAGCTACAGAAGGAGAAACAGGACTTGGAGCAGCAACTTCTGGAGAAAAATAAG
Seq A exon
GTGAGGATGCCTTTTGCATGGCTGTTTCTGTCTCCACCAGGTCCTCACCCTCAGGCCTAAAATGACCCAGTCCATCCTTGGAGGTTTTTGTGGTTTCCCCCGCACCTCCTGGCAACCATGACCCCTCTCACCCAAAGGCCTTCCTCCTGATCTTCCGTTCCTCCTGCACTGTCCTCCTCCACACCCTCCCCAGCCCTCTTCTCCCCACCCCCTGGAGAACTGGACAAGTGTCAGGCTTGGGCAGCTGCAAGCCTGCATGTTCCCTGCCAGCTCTGCTGTCCCCAGCCAGGCCATAGCGACAGTCCTCTTTCGTCTATACTTCCTTTCTACAGCTGTGGAAGTAAAGCACTGATAGCTGCCTTTAAGGGTTTGTTTGGGTGGGAGGAGGGGGTTATGAAATGAAGGTATTTGTGAACCGTCCTATAAACTTTATAAACTCTCTGGTATTTGGTAGAGGCTCAATAAATGTCATGGTCCCCACCCTTCACCCTCCAGCCTTTCCACCTATATAAATGCAGGATCTCATTTAATCCTGGTTCTTAAAGTGTCCTGTGAAGCTTAGTGTGCCAGCCGGCTATTGCTCTGGCCTGACATTCTGCCCCCAAATTGTGTGTGTGTTTGTGTGTGTGAGTGCACGTGTGTGTGTGTGTTTAGATCTTTTACAAGGGGGAAAGTGTTCATTATGTCTAATATAAAATACAGAAGCTTTGCAGCAGTGGCAGTATCGTAGCCAATGAGGTCTATCCGAGGCGCGATTATTGCTAATTGAAAAAAAAAATACACACAGGAAAGTGTACAAAACAAATGTGTGTCTCAGTGAATTAACAGAAAGCAGACCCATGTAACCACCCCGATGCGAATCAGGATATTGCCAGCATCCCAGAAGCCCAGCCCCCTGAGCCCCTCCCAGCCCTGTCAGTCACTCCGATCCCAGCCCTTCTGGCAATGACTGCCTTGCTTTTTTCCCTAGTGTCACCTCAGCTCGCATTGCTCAACCCCACAGTTTCGTTTTGCCTGTTTGCAAATTTCCCGTTTGTCCCCTAGGACCTCCGTCCCTTGAGCCTCTGGCCTTACCAGCTGTGCTGCCTTCCTGCCTCCTTGTTCAGCGTCGGGTCTGTGTCTGTCACGGGATCACTGCCTTCCCGACACCTGCGGTCCTCTGGCCTCTCTCCCTTTCCTCAGACTGTCCTAGCCAAGCTCTGGTTAAACTTGGGCTAAACCCAACTCTTCCCTGCTCCCTGCCTGCAGCCATGGAGGCAGACCTGGCTGGAGAGTGCCATCACCTGGGCATTCAGGTCCCCTCGAAGCTCAGGACCATGGTCCTGCGGGCAGCCCAGTGTTCCCCGCAACCCCACCTCATCCGTGGGCCTTCACGCCCCTCTGCCCCTAACCCCAACTTCATGTCTACCTTCTCTCCTCTCTTCACCTCAACCCTGCCTCACCCACCCTGGTGCTCCCACCTCCTGCTTCTCTGAGAAGGGACGTGCCACAGCCTCTCCTCATATCCTGTTCCCCCACCTCCCCAAGCACTACGCCAGCCGCCTCCCCCTTCTTGCCTAGGTCGTTTTTTCTTGGAATCGTCCCATCTACTGAGAGGTGCGCCGTTGTGCAGGCACCTTATGAAAGCCCTCGGCTTGCACCCCTTTGCCCTGCTGCTGCGTCTCTGCTCACCTGCCGTGCTGACATGTTAAAACTTCCTATATCTGCCATCTCCATTCCCACTCCTCTTCTCTCTCAACCTTTCCTCCACCACTCCACAGAAAAACACTCTTGTCAAGCTCATCAGTAACATCTGCACTGCTAAATCCAGAAGGCAGTTCCTAATTTTCCCTCTGATTGGCCTGTTGGCAGCCTTGGACAGGCGTCTCTTCCTCCTCCTGAAGCTCCCATCCATGGCCTGCTCCTTCTCCGTCTCCTCTGACAGGCCAGTCTCCTTCCCACTGCCACCCGCCGTGCACAAGGGCAGCCCTCACAGCTCTTCTCTGCACTGTGCGCCCTCCTCTGCGATCTCAGCCATGCCCTGCGCAGCTGACTCCCCTCCCTACCTCCCGCCCAGACAGCTCCACGGACACTAGCCTCACAAACCTGTCTCCACATGAGCTCTAAGGTGTCTGAAACTCAAAACATCGGAAAACACACTTCGGCTTCACTGTGTTCCCTGGCTGCCATGCCACCTTTCCCATCTCAGTAGACGGCAAAAGCCTTGGAGTTGTCCTATCTGCCTTGGTTCTTTCTCTACCAGCATCCAGGCTGTTAGCAGATTCCTTCAGCACCCCCTTCACACATTTCCCAGAATCCACCACTTCACATCGCTGCCACCTGCTTCAGGTTACCATTGTCTCTTCTCTGGAAGATGGTATCAGACTTCTAACTGGTTTCCCTGGCACTCTTGTCTTAGCCCTCTGATGAAAGCCTGTCTCTGTTGATCTCTTATGAAAGCCTGAGTCCTTGCAGAGGCCCGCAAAGCCCTGTGTGGTGTGGCCCCTCATTACCCCTGCCAGCTGAGCCCCTCCTGTCCTCGTCACTCCCTCTCAGCCACAGGGGCCTCACTCCCATCAAGTACCCTCCAACCTCAGGGCCTTGGCACTTGCTGAGCCTTCCGTTTGGAAGTGCCTTTCCCTGGTCATCCTCACTTTCTTTATGCCACCCTGACCAGCCTCACCACCAGAACCCCACCCTCCCTCACCATGCTGCCTCTTCTCCATGCCTCTTCATACCCTCTGATACACTGCGGATTTGATTATTGATTTCTTTTTTTTTTTTTTTTTGAGACAGAGTCTCCCCCTGTCACCCAGACTGGAGTGCAATGGCGTGATCTTGGCTCACTGCGACCTCTGCCTCCTCGGTGCAAGCGATTCTGTTGCCTCAACCTCCCGAGTAGCTGTGATTACAGGTGCCCACGATCACGCCTGGCTAATTTTTTTTTTTTTGAGATGGAGTCTCTGTCGCCAGGCTGGAGTGCAGTGGCGCGATCTCAGCTCACTGCAACCTCCGCCTCCCGGGTTCAAACAATTCTCCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCGCTACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGATGGTCTCGATCTCTTGACCTCGTGATCTGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGTGCCTGGCTTTTTTTGTATTTTTAGTAGAGACGGGGTTTTGCCATGTTGGCCAGGCTGGTCTGGAACACCTGACCTTGTGATCCGCCTGCCTTGGCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCACACCTGGCCTGTTTATTGATTCTTTTCCCCTCGAGGGTGAACTTTTGACTTTTTTGTTGCCGTTTCTCCAGCCCCTAGAACAGTGCAGGGACTCAGTAACTATTAGATGAATTACTGAGTGAGGAAAATCCAGGAAACCAAAATAACGTAAGATAAAGTAGCCAATGTACTTTTGGGGCAGTGTCCAGCCTCATGGTCAGCCAAGAGAATAGAAATCAAAGCCACAAGGTGCCATTTTACAAAATTGGGTGTGTTGGAGGTCACTTAAGATGCCTCACAGTGGAGAAGTTAGAAACTGTGGTCTTCTGACTCAGTCATTCTATCCCCAAGAGAAACAATGGGGATTCCTCGCTTGGGGAAACAAAGCTTATCCCAGCTTTGTTTAAAGTGGAAGCCCAGCCACGCAGTAAGACAAGGGCATCCCCGGGAGTTCCTGTCACATTAGACATTACAATTAGGAAAGCTGGAGGAGGCAGTGATGACTCTGATACATGAAAAATGTATTTACAATTCCAGCCACGCTGTGCAAGAATGGGGATGTGGACTGGGGGTACATGGAAGAATGCATTTTGATATATTACCATTCAGAGACTTTGAATAAATTTTTATTTAAAACCGGGCGTGGTGGCTCATGCCTGTAATTTCATCACTTTGGGAGGCCAAGGCGGGCAGATCACCTGAGGCCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAATCCTGTCTCTACTAAAATGACAAAAATTAGCTGGGCGTGGTGGCACACACCTGTAATCCCAGCTACTCAGGAGACTGAGGTGGGAGAATTGCTTGAACCCAGGAGGCAGAGGTTGCAGAGAGCCGAGATCGTGCCACTGCACTCCAGCCTCAGGGACAGGGTAAGACTCCGTCTCAAAAAAAAAAAAATTTTTTTTCCCTATATTATGAAGTTTTTAGTTGAGAAAATGTCTCAGCCTGTCTAGTGAATAATGGAATGTGTATGGAATGTGTAATAAATGTAAGGCTCATAATACTATTTAAACATCAAAGAAAATTAGCCAGGCGTGGTGGCGCACAGCTGTAGTCCCAGCTACTCGGGAGGTTGAAGTGGGAGAATTGCTTGAGCCCAGGAGTTCAAAGACTGAATCCAGCCTGGGCAACATAGTGAGATGCTGTCTCTTAAAGAAAACAAAAAAGGCCGGGTGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGTGGACCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGTGGGAACCAGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCACTTGAACCCAGAAGGCAGAGGTTACAGTGAGCTGAGATTATGTCACCTGCAATCCAGCCTAGGCAACAGAGCAAGACTCTGTCTGAAAAAAATAAAATTAGCTGGGTGTGGTGGCACACAACTGTAATCCCAGCTACTTGGGAGGCTGAGACAGGAGAATCGTTTGAACCCAGGAGGCGGAGGTTGCAGTGAGCCGAGATTGCACCATTGCACTCCAACCTGGGCAACAAGAGTGAAACTCCATCTTAAAAAAAAAAGAAGGAGAAGAAGAAGAAAAAGACAAAAATGAGTCGGGCATGGTGGTGTGTGCCTGTAATAGCTCCCCTAGAGCCTGAGGCAGGAGAATCACTTGAACCCAGGAGGCGGAGGTTGCAGTGAGCTGAGATCGTGTCATTGCACTCCAGCCTGGGCAACAGAGTGAGACTCCATCTCAAAAAAAAAAAAATTATTTTCCAAATTATTTATCTAAAACTGGATGTTGATGAGTTGTGCAGAAAAACCATGATCTTTTTAGGGTGTTCAAAATAAGCATTGCAGATTATTCATGTATTTCAAGAGAGCAGTAGTGATGAGAACCGTAAGTCCTCGCCTAAGTATCCTACTTGGGGATCACAGCATAAAAATTGAATTTTGAGGGCAAAATCTATGGTCCAGAGCCTTTTCCAGCTGGGCTGTGTGTGGTGGACCAAGCCCCCGGGAAGGGATAGGCAGCGCTGGGGCACTCATGTCAACACAGAGGGACTGTGGCCCCTGTGGGACGTGGAGACTCAAGCGTGTGAAAGCAGTGGCCCAAGAGGGATGACAGCCCAACAGTCGTAGGCACAAGCATGCGACAGCTGAGCACCAGCCTCTCAGGATGACTTCTCAGGGCAGAGGCTCCTCACAGGTGTACAGGGGATCCCGTGGGATCTTCGGGTCTGTTTCCTTTGGTGAAACATGCATCTAACGATTGGCTTTCTGTGGGGTGGGGCTTGTCGCAG
Seq C2 exon
ACCATAAAGCAGATGCAGCAGCGGATGCTGGAGCTCCGGAAGACTCTGCAGAAGGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136935-GOLGA1:NM_002077:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.865 A=NA C2=0.512
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)