RnoINT0066239 @ rn6
Intron Retention
Gene
ENSRNOG00000014493 | Golga1
Description
golgin A1 [Source:RGD Symbol;Acc:1311305]
Coordinates
chr3:23313448-23316094:-
Coord C1 exon
chr3:23315951-23316094
Coord A exon
chr3:23313508-23315950
Coord C2 exon
chr3:23313448-23313507
Length
2443 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TTTGGGATGGGTTACCTCAGATT
3' ss Score
1.79
Exon sequences
Seq C1 exon
GTCATCTCAAAAGCCATGCAGAATTGTGAGTATGAGCTTCCAGCTGCAGAAGGAACTCCAAATGGTGAGGTTGGAGCCATGGATCTAAAGCAGCTACAGAAAGAAAAACAGGACTTAGAACAGCAACTTACAGAGAAAAATAAG
Seq A exon
GTGAGGACACCACACCTGCCTAGCTGTGATGGGTCTGCTCTAACCTGGCCCTCCCCCTAGTCTGCCATCTTTCCACTATTTTTCTCATGGCTTCCCCCCAACACTCCCAACCCCATGGCTGTGCTGTCTTGGAACTCTTTGTAGACCAGGCTGGCCTCAGACTCAGATCTGAGTGCTGGGACTTTTGGCCTCACTCCTCAGACCTCCTCCGCTTACATCTCTCTGATGTGTAGTGGCCCATACCTGCAATCCTGCACACTGGAGACAGATACAGAAAGGCCAGGAAATAAGAACAGCCTGGGTTATATGAAGCTTGCTCTCCTTTTTGTTTCAATTTTATGTATGTGAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCACTACAGAAGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTGAATGCTGAGCCATCTCTCCAGCCTATGAAGCTTTCTTTAAAGACAGGTTTCACGTGGGTTTTTTGTTGTTGTTGGTGGTGGTAGGTTTTTTTTGTTTTGTTTTTTGTGAGACAAGACCTCACTGTGTAGCCCTGTCTGGCCTAGAACTTACAGAAATCTGCCTGTTCACATCTTTCCAGTGCTGGGATTAAAGGTGCATGCTATATCAACCTTGAGTCCTGCTTTCAAGAGTGGCCAATGGGGAAATTCAGTCATGGTAGTATGTGCCTTTAATCTCAGCACTCTGGAGGCAGGGGCAAGTGGATTCATCTGAGTTCAAGGCCAGCCAGGGCTCTGTAATGAGACCTTGTCTCAAAAAAAGAAAGGAGGGGGTTGAGGAGGTGTCAGGGACTGAAATGGGGCTCAACAATAGAACACTTGACTAGCATGCATGGTAAGGCCCTGAGCTCCATCCCAACGTTACAAAATAAAACAAAATAAAAATGGGGTGTTGGGGATTTAGCAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGGAAAAAAAAGAAAAGAAAAAAAAAAAAAAACCCAGTAAAGCGTGAGCATTCCCTAGAGTTACTAACCCATTACAAATTACCACTAGGAAGCCAGACATGGTTATACATGATTGTAGTGCCAGTACTTATGAGATAGACACAGGAAAATAGGAGTTCAAAGTCATCTTCTTCGGGTTTATAGCAAGTTTGAGGCCAGTCTGGTATCTATGAGACTCTGCCTCCACCACCCCATCCCCTCCTTTCATGTACACACACACACACACACACACACACACACACACACACACACACACACACACGAAACCACTGGGGAAATAGAAACAGTGAAAATGGTGCATGAAAAAAAAAGCTGGGCATTCTGATGTACAGCTCTAATCCAGCACTTGAGAGGCTGAGACAAGAGAACTACTGTGAATTCCAAGCCAGCCTAAGCTGTAGGAAGATCCTGTCTCAGAACACAAAAAGGAAGCAAGTTTTCACTCTTCAGTATAAGAATCAGAGCATAAACTAGAAAGTCAAAGAAAACTCTTTTTTTTTTTTTTTGGTTCTTTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCTTAAGACTTTCCCAAGGTACTGGAGAGACAGCTAAAAGGTTAAAAGCACTAGCTGTCCTTGCAGCTTGGGTCCAGTTCCCAGCACCTCCAGGGCAGCTCACAACTCTCCTGTGCTGTGAGCTCATAAAATCTGCAATTCCTGTTCCAGGGGACCCCACACCCTCATACAACATGCAAGCAAAACACTACTGCACATGAAAAGTACGTGTGTATATGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAAACTAGTATTGATGGATTTTACTTTTACACTATCTGAATTACACTGCAAATTACCAGTGCAGTGGTGATAGGTGTGAAAAACAAAATTAAAAAAAAAAAAAAGGAATCTGAGAGGCTGGAGAGATGGCCCAGAGGTTAAGAGCACACTTATCCAGAGAACCTGGCTTCAGTTCCCAGCATTCACATGGTAGCTCCAGTCCCATTGGTTCTGACACACCCTCAAGCATAAACATCCATAAATATAAAATTAATTTTTTTTAAAAAAATGGAATATATTCTGCAGAGCCACTCAAAGCAGCACTCTTGAAGTATATGGGCACACCAATAAGCCTGAGGACCCACCCAAGGTTGGGTGGGTGTTGAGAGAACTATTGAAAGAACAATAATACTGTGGCCTCTCTGGGGCCTAGGAAAGCAAGGGGTAAAACAGCAAGAAATGAAGGCAGCTGAAAGGGTAAGGGGGATGAGCCTTCAGGAGGGCCTCTGAAAACCTTCTAACCTGACACTGACAACTGGCTTTGGGATGGGTTACCTCAG
Seq C2 exon
ATTATGAAGCAAATGCAGCAGAGGATGCTGGAACTTAAGAAGACTCTGCAGAAAGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014493:ENSRNOT00000019703:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.771 A=NA C2=0.100
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]