GgaINT0126282 @ galGal3
Intron Retention
Gene
ENSGALG00000001025 | GOLGA1
Description
NA
Coordinates
chr17:10295781-10296531:+
Coord C1 exon
chr17:10295781-10295939
Coord A exon
chr17:10295940-10296471
Coord C2 exon
chr17:10296472-10296531
Length
532 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
GTCTTTTGCTCTGCTTACAGATG
3' ss Score
10.01
Exon sequences
Seq C1 exon
GTTTCAGAACTAGAAGAATCAGCAAGAGGCTTGAATGAGCACTTACATCTTCCAGAAAATTGTGCGACAGAACAGAATGGAGAGGTAACAGCTACAGATGTCATTCAACTTCAGAAGGATAACAGAGAGCTGGAACAGCAAATTGTTGAGAAAAACAAG
Seq A exon
GTAAACTAAACAACAGAAATGGCTGTTTTAGTTAGGAAGCCTAATAACAGGTGCCAAAGCCTTAGAAAGGCCTGAACAGGCTTACAAACATGAGGGATCCAATATGAATCCAACATTCTTTGAGTATTTCCCTACCCTAGACTGTAAAAGGGCACAGCAATTGTGAATGAAAATTGCAGCCAGAATTGTAGAGAAATGTCTGTGACGCGTTCTGCTTCTGCTCCTTACCTATTTTGGAAAAAGAAGCACCAGATGATACCAGTTACAACTTTCCTGCAGAGCCCTTTTGTTTGAATTCAATTCATTTCTGTTGTGCTGTCACACTGAAGCCTCAGTGTCCTATTGCATGCCTGCTAACATTTGCAGTTAGAATTGTGAGACGTCCAGATTGCTTCTTTGGAGCTGTCAGTTTGTTTAATGATTGCTTTATTCTTTATGTTTGTTTGCTGTGTTTTCTCTTCAGATACTTCTGTGTCAGTATGTGCCCTAACACTGAATGCTGTATTAACACCGTCTTTTGCTCTGCTTACAG
Seq C2 exon
ATGATAAAGCAGCTACAACAAAGAATGGCAGAACTGAAAAAAACTCTCCAGAAGGAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001025:ENSGALT00000001514:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.679 A=NA C2=0.150
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCAGAACTAGAAGAATCAGCAA
R:
TTTCAGTTCTGCCATTCTTTGTTGT
Band lengths:
198-730
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]