MmuINT0072141 @ mm9
Intron Retention
Gene
ENSMUSG00000026754 | Golga1
Description
golgi autoantigen, golgin subfamily a, 1 [Source:MGI Symbol;Acc:MGI:1924149]
Coordinates
chr2:38875591-38878364:-
Coord C1 exon
chr2:38878221-38878364
Coord A exon
chr2:38875651-38878220
Coord C2 exon
chr2:38875591-38875650
Length
2570 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TTTGGGGTGGTTTACCTCAGATT
3' ss Score
4.86
Exon sequences
Seq C1 exon
GTCATTTCAAAAGCCATGCAGAATTCTGAGTATGAGCTTCCAGCTGCAGAAGGAACTCCAAACGGTGAGGTTGGAGCCAGTGATCTAAAGCAGCTACAGAAAGAAAAGCAGGACTTAGAACAGCAACTTATCGAGAAAAATAAG
Seq A exon
GTGAGGACACCATACCTGGCTACCTATGCTGGATCTGTTCTAGCCCAGCCCTCAGGCCAGCAGCCCAGCTGTTCCTCCTCATTGCTATTACCTCCTCCCCAAGTCTGCCATCTTTCCTCTAGAGGTTGGTGCTGGTTTTCTCATGGCTCTCCCCCCACCCCACTTCCTGCTGTCCTGTAACTCTTCTCTGTAGACAAGGCTGGCCTCAAACTCAAATCTGCATGCTTCTATCTCCTGAGTGCTGGGACTAAAGGCATGTATGGCTTTTGACCTCACTCCTCAGACCTACTCTGCTTACATCTCTCTCAGTGCAAATTGCAGTCCGTGCTGAGTGTAATGACCCACACCTGTAATCCTGCACTCTGCAGACAGATACAGAAAGGCCAGGATAAAGGCCAGCCTGGGTTATGGAAAGCTTTCTTTAAGACAAGACCACACTGTATAGCCCTGTCTAGCCTAGCACTCACAGAGTTCATACCTTTCCAATGCTGGGATTAAAGGTATATGCCACCTCAACCTTGAGTCCTGCTTTCAAGAATGGCCATGGGGAAATTCAGTCATGGTAGTATGCGTCTTTAATCTCAGCACTCTGGAGGCAGAGGCAAGTAGATTCATCTGAGTTCAAGGCCAGCCAGGGCTCTGTAATGAAACCTTGTCTCAAAAAAGAAAGGGGGTGGGGGAGGTAGGGGAAAGAGAGGAATGAAATGGGGCTCAATAATAGAATACTTGACTAGCTAGCATGCATAAGACCCTGAGTTCCATCCCTAGCATTACAAAAATAAAAATAGAAACTCAGTCACAAAGTAAAGCATGGGCATCCCCTAGAGTTACTAGCCCATTACAAATTACCACTAGGAAGCCAAGCATAGTTACACATGACTGTAATGCCAGTACTTAGGAGGGGGACACAGGAAAGTGGGAGTTCAGTCATCCTTGGATACATAGCAAGTCTGAGCCAGTCTGGTATATATGAGACTCTGCCTCCCCCACCCTACACACACACACACACACAACCACTGGGGAAATAGTAAGTGAAAGTGAAACGTGAAAAAGAAAAAGCTGGACATTCTCATGTACACCTGTAATCCTAGCACTGTGAATTCAAAACCAGCCTGAGCTGCTTAGGAAGATCCTGTCTCAGACACAAAATAGAAACAAATTTTCACTCTTCAGTACAAGAATCAGAGCATAAACTAGAAAGTCTAAGAAAATTCTTATTTTGCTCTTATAGTTGTAAGATCTCATTCATATATATATATAGATATATAGGTATATCTATATATACATATAGTTTGTCTGTTTGTTTTCTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTACCTCCTAAGTGCTGGGATTAAAGGCGTGTTCCACCACTGCCCGGCATCAGAGATATTTTTATTTAAGACTTTTCCAAGGTACTGGAGAGACAGCTAAGCAGTTAAGAGCACTGTTTGGGTTTAGTTCCCAGCACCCACATGGCAGCTCACAACTCTCCTGTGTTCTGAGACAGGATCTTCCTAAGTAGCTCAAGTTGCCTTTGAGTCACAGTAGTTCTCTTATCCCAGCCTCTCAAGTGCTAGGATTACAGGTTTAACTCCAGTTACAAGAGATTCACTGCTGCCTTCTGGCTTCCATGAGCTCCTGTATTCAGGTGTAGCCCATAAACAGAGGCAGGCACACAGACATACACAAATGGTTTTGGTTTTTGGCTTTTTTTTTTTTTAAGATTTATTTATTATTATATCTAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTTTTAACTGTTGAGCCATCTCTCCAGCCCCACAAATGTTTTTAAAAATAAATATTTAACAATTTCTCATTGAGTTTGATCCCTGTCACTGAGGAAAATAAAATTCCTGTGTTACAGATTATAAAGTTTTAAATTAGGAAAGTGAAGCTCAGCCTTTCTAATGAATGATGAGATGTGTAGTAAACCACATTTAAGCCTTGTAATAAAAAACCCACTGGTTACATATGAAAATAAAGGGGCTCAGTAGTTAAGAGCACACTTATCCAGAGAAGCTGGGGTCAATTCCCAGCACCCACATGGCAGCTCCAGTCCCATGAGACACCCTCAAGCAAAACATCCATATACATAAAATTAATTCTTTTTTAAAAAATGGAATATATTCTGCAGAGCCACTCACAGCAGCACTCTCAAAGTATATGAGCACTACCAACAGGCCTGAGGACCCAGCACACAAAGTTGGGTAGGAAGTGTACTGTCAAGAGAACAATAATACTGTGGCCCCTCAGGGGCCTCAGAAAGCAAGAGGTAGAACAGCAAGAAAGGAACAGCTGAGGGAGGGGTAAGGAGAAGGAGCCCTCAGCAGGGCCTCTGGAGACCTAACTTGACGCTGACAGCTGGCTTTGGGGTGGTTTACCTCAG
Seq C2 exon
ATTATGAAGCAAATGCAGCAGAGGATGCTGGAACTTAAGAAGACTCTACAGAAAGAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026754-Golga1:NM_029793:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.812 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: