BtaINT0067845 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015286 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr11:95896264-95896992:-
Coord C1 exon
chr11:95896823-95896992
Coord A exon
chr11:95896376-95896822
Coord C2 exon
chr11:95896264-95896375
Length
447 bp
Sequences
Splice sites
5' ss Seq
GAGGTTCTT
5' ss Score
1.82
3' ss Seq
TCTGCTTTCTTTCAATGAAGAGA
3' ss Score
4.65
Exon sequences
Seq C1 exon
CTTTTAAAAAAAGAAGAAAGCTTGGGGAAAATGGAGCAAGAATTGGAGGCACGAACCAGAGAACTTAGTCGCACCCAGGAGGAATTGGTGACTTCCAGTCAGATTTCGTTAGACTTAAGCCAGAAGCTGGAAGAACTGCAGAGACACTACTCAGCGCTGGAAGAGCAGAG
Seq A exon
GTTCTTGCTTGGTCTGTGGGGCCCATGGGAAGCGGTGTTAGTGTAGCTCTGGCTTGAGCCTACCTGTCTTTCCCCATTGCTCACTGTGGCACTTTCTGATCTTAGTTCCTACAAAGTCTTCTGGATTTGTCCGTTCCCAAACCCTCACTCCTCTAACCTGTCGAGCTCAGAACACCTCCAACCCTGCCAAGCAATTTAGATTGTTTTAGTTGCTAAACTGTTGAGTAGCTAAAGGCAGATCAGGATTTCTTGTTCAAACCTGGGTGGAATTTTTCTCTTGGGACTTCTGCTTCAGAGAGAGTCAGGGAGTCTTATCCATGGATAATCTTCACATGGCTAATGTTTGCAGCCCTGACATGTAAAGAACCATGTGTATTTTTCCTGTGGAAGAATGTGTCTTAGATGGGGTATTCAAATTTGTTCATTATCTGCTTTCTTTCAATGAAG
Seq C2 exon
AGATCATGTGACAGCTTCGAAAACAGGTGCAGAAAATAAGATCACAGTCCTGGAGCAAAAGGAACAGGAGCTCCAAGCATTCATTCAGCAACTTTCCATTGATTTGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015286:ENSBTAT00000020327:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.491 A=NA C2=0.447
Domain overlap (PFAM):
C1:
PF0026115=Tropomyosin=FE(50.9=100)
A:
NA
C2:
PF0026115=Tropomyosin=PD(25.5=73.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAAAGCTTGGGGAAAATGGA
R:
TTTTGCAAATCAATGGAAAGTTGCTG
Band lengths:
270-717
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development