MmuINT0072152 @ mm10
Intron Retention
Gene
ENSMUSG00000026754 | Golga1
Description
golgi autoantigen, golgin subfamily a, 1 [Source:MGI Symbol;Acc:MGI:1924149]
Coordinates
chr2:39047023-39047766:-
Coord C1 exon
chr2:39047597-39047766
Coord A exon
chr2:39047135-39047596
Coord C2 exon
chr2:39047023-39047134
Length
462 bp
Sequences
Splice sites
5' ss Seq
GAGGTTCTT
5' ss Score
1.82
3' ss Seq
TCTGCTTTCTTTTCATGAAGAGA
3' ss Score
4.75
Exon sequences
Seq C1 exon
CTTTTAAAAAAAGAAGAATGCTTGGGGAAGATGGAGCAAGAATTGGATGCACGAACCAGGGAACTTAACCGTACTCAGGAGGAGTTGGTGACTTCTAATCAGTTGTCATCTGACTTAAACGAGCGGCTAGAAGAATTGCAGAGACACTGCTCAACGCTGGAAGAGCAGAG
Seq A exon
GTTCTTGCTTGGTCTGTGGGGCCCTTGGGAGAGGTGTTGGTGTAGCATTGCTAAAGCCCACCCACATGTCCCCATTGCTGATCAGAACCTTTTTATCTCAGTGCTGGCAAAGGCTTCTGCATTCATCCTTACATGTCTAGGCCTCAGGCCCTCTACTCCATCACCACTCACTCTCTCTCCCTCCCCTGCAGACGCACAAGTTTATTCTAGTAAAACTACGCAGGACAATCTGATTTGAGTTGTAAAGTTATTGAGTACTCAAAGACAGAACTCATTGCTTAGACCTGGGTGGTCTTCCTGCTTCTGTTTCTGAAAGCCAAGGAGCCTTTACACGGAGATAAACTTAGTGTGGCTGTAACAACACTTGCAGCCTGAAATATAAGGAGTCATGTGCATTCTGCCTTTGGAGAGTAATAGAGGAAATATCAAAATTTGCTCGTTGTCTGCTTTCTTTTCATGAAG
Seq C2 exon
AGATCACTTGACAGCTTCAAAAGCAGGTGCAGAACATAAGATTGTAGTCCTGGAACAAAAGGAACAAGAGCTCCAGGCGATCATCCAGCAGCATTCCATTGACCTACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026754:ENSMUST00000039165:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.601 A=NA C2=0.184
Domain overlap (PFAM):
C1:
PF086476=BRE1=PU(44.4=56.1)
A:
NA
C2:
PF086476=BRE1=FE(51.4=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAATGCTTGGGGAAGATGG
R:
TTTTGTAGGTCAATGGAATGCTGC
Band lengths:
270-732
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types