HsaINT0070382 @ hg19

Intron Retention

Gene

ENSG00000136935 | GOLGA1

Description

golgin A1 [Source:HGNC Symbol;Acc:4424]

Coordinates

chr9:127683408-127684171:-

Coord C1 exon

chr9:127684002-127684171

Coord A exon

chr9:127683520-127684001

Coord C2 exon

chr9:127683408-127683519

Length

482 bp

Sequences

Splice sites

5' ss Seq

GAGGTTCTT

5' ss Score

1.82

3' ss Seq

TCTGCTTTCTTTTGATGAAGAGA

3' ss Score

3.78

Exon sequences

Seq C1 exon

CTTTTAAAAAAAGAAGAAAGTCTAGGGAAAATGGAACAAGAATTGGAGGCACGAACCAGAGAACTTAGTCGTACCCAGGAGGAGTTGATGAACTCCAATCAGATGTCATCAGACTTAAGCCAGAAGCTAGAAGAATTGCAGAGACACTACTCAACGCTGGAAGAGCAGAG

Seq A exon

GTTCTTGCTTGGTCTGTGGGGCCCTTGGGAAGAGGTGTTAGTGTAGTTCTGGCTATAGCCTGCCCACCTTTCCCCATTGTTCATTACACCACTTTCTGATTCCGGTGCTGGCAAAGGCTTCTGGACACATCCTTACCTGCCTAGGACTCAGGCCTCACCCTACCTCCAACCCATTTTCCCCTTCAGCTGCTGAAACTCAGGACAGTTCCACCCTGCTGAACAATTCAGTGTGGTTTTAGTTTGTAAAGTATTAATAGACTAAGGAAAGGCAGGTCAGGATTTCTTTCTTAAACTAGGGTGGACTTTTTCTCTTTGGGCTCCTGCTTCAGAGAGAGCCGAGGCTTTTTCCGTTGAAAACCTGCATGTGGCTAATGATGCTTGTAGCCCTGACACAGAAGAAACCATTTGTATTTTTCCTGCAGAAGACTGTATATTAGATGAGATATCCAAATTTGTTCATTGTCTGCTTTCTTTTGATGAAG

Seq C2 exon

AGATCATGTGATAGCTTCAAAAACAGGTGCAGAAAGTAAGATCACAGCCCTGGAACAAAAGGAACAAGAGCTCCAAGCACTCATTCAGCAGCTTTCCATTGATTTGCAAAAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000136935-GOLGA1:NM_002077:9

Average complexity

IR-S

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.860 A=NA C2=0.474

Domain overlap (PFAM):

C1:

PF104734=CENP-F_leu_zip=PU(15.4=95.0),PF078886=CALCOCO1=PU(13.0=95.0),PF0157614=Myosin_tail_1=PU(12.9=90.0),PF083176=Spc7=PU(12.7=95.0),PF048597=DUF641=PU(19.6=90.0),PF045827=Reo_sigmaC=PU(12.8=95.0)

A:

NA

C2:

PF104734=CENP-F_leu_zip=FE(30.1=100),PF078886=CALCOCO1=FE(25.3=100),PF0157614=Myosin_tail_1=FE(26.4=100),PF083176=Spc7=FE(24.7=100),PF048597=DUF641=FE(40.2=100),PF045827=Reo_sigmaC=FE(24.8=100),PF0192313=Cob_adeno_trans=PU(23.1=71.1)

Main Inclusion Isoform:

ENSP00000473648