GgaINT0126272 @ galGal3
Intron Retention
Gene
ENSGALG00000001025 | GOLGA1
Description
NA
Coordinates
chr17:10289189-10289865:+
Coord C1 exon
chr17:10289189-10289358
Coord A exon
chr17:10289359-10289753
Coord C2 exon
chr17:10289754-10289865
Length
395 bp
Sequences
Splice sites
5' ss Seq
GAGGTATTG
5' ss Score
7.44
3' ss Seq
TTTTCCCTATTTCTGTGAAGAGA
3' ss Score
4.7
Exon sequences
Seq C1 exon
CTTTTGAAAAAAGAAGAATGTCTAAGCAAAGCAGAGCAGGAACTAGAGGCACGCACTCGAGAACTAATCCATGCTAAGGAGATGCTTCAGGAAGCGAGCACCGAGTCATCAGGCCTGCGGAAAGATCTTCATGAGTTGCAGGAGCAGTTCTTGGAGGTGGAGGCACGGAG
Seq A exon
GTATTGCATGTATTTTCATGAAGAGTGTATTTCCCCTGTATTTTTGTCCAGATCTGTTTTTTTGGGGGGGGGAAGTGTTTATATATGCAATGAACTGACTAACTAATTGTTTCTAGTATGCCAGTGTGGATGTAAACACCAGGTTTATATATCTTTTCAAGCCAGTTAAAGCAGTACTTGTTTAAAATTTTGCAATATTTGTTTGGTTGGTTGGTTGGTTTTTTTTGAATACTTAACCACTACTTCTTTGGAAAATGTATAATGAATATGGTGGCTGGTTTTAGTATAAGAAAATCTGGTTGATGTTGCTTAGTCTATTTATCCTTTAGCAGATAATTCTGCCAAATGTTATTTTTCTGGAACACTATGTCACTTTTTTCCCTATTTCTGTGAAG
Seq C2 exon
AGATGAACTGATGACAGCTGAGAGGAATGCAGAAGATAAGATCACTGCTCTGGAGTTGAGAGAACAGGAGCTACAAACTGTCATTCAGCACCTTTCTGTAGACTTGCAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001025:ENSGALT00000001514:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.421 A=NA C2=0.474
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAATGTCTAAGCAAAGCAGAGC
R:
ATTTTGCAAGTCTACAGAAAGGTGC
Band lengths:
270-665
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]