RnoINT0066251 @ rn6
Intron Retention
Gene
ENSRNOG00000014493 | Golga1
Description
golgin A1 [Source:RGD Symbol;Acc:1311305]
Coordinates
chr3:23336779-23337529:-
Coord C1 exon
chr3:23337360-23337529
Coord A exon
chr3:23336891-23337359
Coord C2 exon
chr3:23336779-23336890
Length
469 bp
Sequences
Splice sites
5' ss Seq
GAGGTTCTT
5' ss Score
1.82
3' ss Seq
TCTGCTTTCTTTTAATGAAGAGA
3' ss Score
3.55
Exon sequences
Seq C1 exon
CTTTTAAAAAAAGAAGAATGTTTAGGGAAGATGGAGCACGAGTTGGATGCACGAACCAGGGACCTTAATCGTACTCAGGAGGAGTTGGTGACTTCTAATCAGTTGTCATCTGACTTAAGCCAGCGACTACAAGAATTGCAGAGACATTGCGCAACGCTGGAAGAACAGAG
Seq A exon
GTTCTTGCTTGGTCTGTGGGGCCCTTGGGAGAGGTGTTGGTGTAGCGTTGCTAAAGCCCACCCACGTGTCCCCATTGCTCATGACAACTTCTTTATCTTAGTGCTGGATTTATGGCTTCTGGATTTATCCTTACATGCCGAGGCCTCAGGCCCTCTACTTCATCACAGCACTGACTCTCTCTCCCTCCCCTGCATAGGCACAAGTTTATTCTAGTCCTGCTAAGCAGTACAATCTGACTTGAGTTGTAAGTTATTGAGTACTCAAAGACAGAATTCATTGCTTAGACCTGGGTGGTCTTCCTGCTTCTGCTTCTAAAAGCCAAGGAGCCTTTTCACAAAGATAAATAAACTTAGTGTGGTTGTAATAACACTTGCAGCCTGAAATGTAAGGAGTCATATGCATTCTTCCTTTGGAGAATAATAGAGGAAATATCAAAATTTGCTCATTGTCTGCTTTCTTTTAATGAAG
Seq C2 exon
AGACCACTTGACAGCTTCAAAAGCAGGTGCAGAACATAAGATTGTAGTCCTGGAACAAAAGGAACAAGAGCTCCAGGCGATCATCCAGCAGTTTTCCATTGACCTACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014493:ENSRNOT00000019703:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.386 A=NA C2=0.158
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAATGTTTAGGGAAGATGGAGC
R:
TTTTGTAGGTCAATGGAAAACTGCTG
Band lengths:
270-739
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]