BtaINT0067982 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047135 | GORASP1
Description
Bos taurus golgi reassembly stacking protein 1, 65kDa (GORASP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046518]
Coordinates
chr22:12473787-12474138:-
Coord C1 exon
chr22:12474052-12474138
Coord A exon
chr22:12473918-12474051
Coord C2 exon
chr22:12473787-12473917
Length
134 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
GTGCTGTGTGTCTGTTGTAGTCC
3' ss Score
9.49
Exon sequences
Seq C1 exon
GATGTGGAACCCTCTTCACCTGCTGCCCTCGCAGGCCTGCGCCCCTACACAGACTACGTTGTGGGCTCGGACCAGATCCTCCAGGAG
Seq A exon
GTGAGGAAGGGCAGCCTTCCCTCCCCACTCCCCCGGCCCCTTGGATGGGGTGCTGTCCATGAGAAGTATCTTGTCTTGTGAGGCTTCCCATCCCAGAGTGGGAACAGGGCTTAGGTGCTGTGTGTCTGTTGTAG
Seq C2 exon
TCCGAGGACTTCTTCTCGCTCATCGAGTCCCACGAGGGGAAGGCCTTGAAGCTGATGGTTTACAATTCTGAGTCTGACTCCTGCCGGGAGGTGACTGTCACCCCCAATGCAGCCTGGGGTGGAGAGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047135:ENSBTAT00000065507:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.136
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=FE(20.4=100)
A:
NA
C2:
PF044959=GRASP55_65=FE(31.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTGGAACCCTCTTCACCTG
R:
CTGCCCTCTCCACCCCAG
Band lengths:
218-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]