RnoINT0066444 @ rn6
Intron Retention
Gene
ENSRNOG00000018047 | Gorasp1
Description
golgi reassembly stacking protein 1 [Source:RGD Symbol;Acc:621122]
Coordinates
chr8:128613483-128613812:-
Coord C1 exon
chr8:128613726-128613812
Coord A exon
chr8:128613614-128613725
Coord C2 exon
chr8:128613483-128613613
Length
112 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
3' ss Seq
TAACACTGTGTCTCTCCTAGTCG
3' ss Score
7.85
Exon sequences
Seq C1 exon
GATGTGGAGCCCTCTTCACCCGCTGCCTTGGCCGGCCTGCGCCCTTACACAGACTACATTGTTGGCTCTGACCAGATCCTCCAGGAG
Seq A exon
GTAAAGAACCCATGGTGGGCCTGTTTCTGGGTCCCCTGAAGGGCCATGGGCAGACGGGTTGTGCACGTGTCTCAAGGCCGGAAACACCCCTCTAACACTGTGTCTCTCCTAG
Seq C2 exon
TCGGAAGACTTCTTCACTCTCATTGAGTCCCATGAGGGAAAGCCCCTGAAGCTGATGGTTTATAACTCTGAATCCGACTCCTGCCGGGAGGTGACTGTGACCCCCAATGCAGCCTGGGGTGGAGAGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018047:ENSRNOT00000024408:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.114
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=FE(20.4=100)
A:
NA
C2:
PF044959=GRASP55_65=FE(31.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTGGAGCCCTCTTCACCC
R:
CTGCCCTCTCCACCCCAG
Band lengths:
218-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]