GgaINT0091018 @ galGal4
Intron Retention
Gene
ENSGALG00000006033 | GORASP1
Description
Golgi reassembly-stacking protein 1 [Source:RefSeq peptide;Acc:NP_001026134]
Coordinates
chr2:5259659-5260219:+
Coord C1 exon
chr2:5259659-5259745
Coord A exon
chr2:5259746-5260088
Coord C2 exon
chr2:5260089-5260219
Length
343 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
ACTATTGTTTCTTTTCTTAGTCA
3' ss Score
6.86
Exon sequences
Seq C1 exon
GATGTTGAACCCGCATCTCCTGCAGCTGTAGGTGGATTGCAGCCATACACTGACTACATTGTTGGATCTGATCAGATTCTGCAGGAG
Seq A exon
GTAGGGTTGGTGTTCCTTCACGTAGTATTGTCTTTGTGCCTGCTATGTTTATGTGTTAGGATTTATAACCCTAATTGCATGCACACAGAATGTATGGGGGTGCTTCTTTTGGACTTTGTGAGGTTAACGTTTAAGATGCTTAATGGCTGAGGTAAACTTTACCAGTATTTATTCCTTTATCTATCTATTTAAACCTGGCAAAGGAAAAAAAAATAAAGTGCCCATTAGTGAGTTTTACTCCATCTTTGAGTTTTTAATATGTTGAAGTAAATGCCTCAGATACTGATTTGTTTCTAGTTCCTTGTCTTATGCATTTAATAACTACTATTGTTTCTTTTCTTAG
Seq C2 exon
TCAGAAGATTTCTTCTCGCTGATTGAGTCCCATGAGGGAAAGCCGCTGAAGCTGATGGTTTATAACACTGAAGCAGACTCCATTCGAGAGGTAGTTGTGACTCCCAATGGAGCTTGGGGTGGAGAAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006033:ENSGALT00000009713:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.068
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=FE(20.4=100)
A:
NA
C2:
PF044959=GRASP55_65=FE(31.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTTGAACCCGCATCTCCTG
R:
TTCCTTCTCCACCCCAAGCTC
Band lengths:
216-559
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]