GgaINT0091018 @ galGal3
Intron Retention
Gene
ENSGALG00000006033 | GORASP1
Description
NA
Coordinates
chr2:5193360-5193920:+
Coord C1 exon
chr2:5193360-5193446
Coord A exon
chr2:5193447-5193789
Coord C2 exon
chr2:5193790-5193920
Length
343 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
ACTATTGTTTCTTTTCTTAGTCA
3' ss Score
6.86
Exon sequences
Seq C1 exon
GATGTTGAACCCGCATCTCCTGCAGCTGTAGGTGGATTGCAGCCATACACTGACTACATTGTTGGATCTGATCAGATTCTGCAGGAG
Seq A exon
GTAGGGTTGGTGTTCCTTCACGTAGTATTGTCTTTGTGCCTGCTATGTTTATGTGTTAGGATTTATAACCCTAATTGCATGCACACAGAATGTATGGGGGTGCTTCTTTTGGACTTTGTGAGGTTAACGTTTAAGATGCTTAATGGCTGAGGTAAACTTTACCAGTATTTATTCCTTTATCTATCTATTTAAACCTGGCAAAGGAAAAAAAAATAAAGTGCCCATTAGTGAGTTTTACTCCATCTTTGAGTTTTTAATATGTTGAAGTAAATGCCTCAGATACTGATTTGTTTCTAGTTCCTTGTCTTATGCATTTAATAACTACTATTGTTTCTTTTCTTAG
Seq C2 exon
TCAGAAGATTTCTTCTCGCTGATTGAGTCCCATGAGGGAAAGCCGCTGAAGCTGATGGTTTATAACACTGAAGCAGACTCCATTCGAGAGGTAGTTGTGACTCCCAATGGAGCTTGGGGTGGAGAAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006033:ENSGALT00000009713:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.068
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=FE(20.4=100)
A:
NA
C2:
PF044959=GRASP55_65=FE(31.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTTGAACCCGCATCTCCTG
R:
TTCCTTCTCCACCCCAAGCTC
Band lengths:
216-559
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]