HsaINT0070790 @ hg19
Intron Retention
Gene
ENSG00000114745 | GORASP1
Description
golgi reassembly stacking protein 1, 65kDa [Source:HGNC Symbol;Acc:16769]
Coordinates
chr3:39142238-39142593:-
Coord C1 exon
chr3:39142507-39142593
Coord A exon
chr3:39142369-39142506
Coord C2 exon
chr3:39142238-39142368
Length
138 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
GTGCTATGCGTTTCTCACAGTCC
3' ss Score
7.88
Exon sequences
Seq C1 exon
GATGTGGAACCATCTTCACCTGCTGCCCTTGCCGGCCTGCGCCCCTACACAGACTATGTGGTTGGTTCGGACCAGATTCTCCAGGAG
Seq A exon
GTGAGGAACCCGCAATTTGCCCCTCCCCAGACCCTCTGGATGTGGTGTGAAGAGAAGGGTGCTGTCCATGAGAAGTGTCTGGTTTTGTTGAGGCTTTAGCCCTGGAAGCAGGCCTCAGGTGCTATGCGTTTCTCACAG
Seq C2 exon
TCCGAGGACTTCTTTACGCTCATCGAGTCTCATGAGGGGAAGCCCTTGAAGCTGATGGTGTATAACTCCAAGTCAGACTCCTGCCGGGAGGTGACTGTAACTCCCAACGCAGCCTGGGGTGGAGAGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114745-GORASP1:NM_031899:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.156 A=NA C2=0.193
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=FE(20.4=100)
A:
NA
C2:
PF044959=GRASP55_65=FE(31.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTGGAACCATCTTCACCTGC
R:
CTGCCCTCTCCACCCCAG
Band lengths:
218-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)