BtaINT0067991 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013218 | GORASP2
Description
golgi reassembly stacking protein 2, 55kDa [Source:HGNC Symbol;Acc:HGNC:17500]
Coordinates
chr2:25577411-25582059:-
Coord C1 exon
chr2:25581929-25582059
Coord A exon
chr2:25577544-25581928
Coord C2 exon
chr2:25577411-25577543
Length
4385 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
AGAAAAAATTATTTTCTCAGCCT
3' ss Score
1.37
Exon sequences
Seq C1 exon
TCTGAAGATCTGTTCAGCCTTATTGAAACACATGAAGCAAAACCATTGAAACTTTATGTGTATAATACAGACACTGATAACTGTCGAGAAGTGATTATTACACCAAATTCTGCATGGGGTGGAGAAGGCAG
Seq A exon
GTAAGGTCACTTTTTTTAGACTAAGTTACAACTGCTTAAATTTACCAGTCAGATATGTTGTAAGCATTGTTTTTAGTTTGAAATAAGTTACTGGTTTATAGTAAAACTTCTCGAGAAAAGGAAAGAGCCAACCACAATTTAGTGAGCATGGTACACAAACTCTAGTCCTTTTTTTTTTTTTAACTCATAAGCACAGAATAGGAAAGACTAGAGATCTCTTCAAGAAAATTAGAGATGCCAAGGGGACATTTCATGCAAAGATGGGCTCCATAAAGGACAGAAATGGTATGGACCTAACAGAAGAAGAAGATATTAAGAAGAGGTGGCAATAATACACAGAAGAACTGTACAAAAAAGATCTCACAACCCAGATAATCATGATGGTGTGATCACTCACCTAGAGCCAGACATATTAGAATGTGAAGTCAAGTGGGCCTTAGAAAGCATCACTATGAACAAAGCTAGTGGAGGTGATGGAATCCAGTTGAGCTATTTCAAATCCTGAAAGATGATGCTGTGAAAGTACTACACTCAGCATGTGAGCAAATTTGGAAAACTCAGCAGTGGCCACAGGACTGGAAAAGGTCAGTGTTCACTCCAATCCCAAAGAAAGGCAATGCCAGAGAATGCTCAAACTACCGTACAATTGCACTCATCTCACACACTAGTAAAGTAATGCTCAAAATTCTCCAAGCCAGGCTTCAGCAATACATGAACCGTGAACTTCCAGATGCTCAAGCTGGTTTTAGAAAAGGCAGAGGAACCAGAGATCAAATTGCCAACATCCACTGGATCATGGAAAAAGCAACAGAATTCCAGAAAAAGATCTATTTCTGCTTTATTGACTATGCCAAAGCCTTTGACTGTGCGGATCACAATAAACTGTGGAAAATTCTGAAAGAGATGGGAATACCAGACCACCTGACCTGCCTCTTGAGAAACCTATATGCAGGTCAGGAAGCAACAGTTAGAACTGGACATGGAACAACAGACTGGCTCCAAATAGGAAAAGGAGTTCGTCAAGGCTGTGTATTGTCACCCTGCTTATTTACCTTATATGCAGAGTACATCATGAGAAATGCTGGACTGGAAGAAGCACAAGCTGGAATCAAGATTGCCGGGAGAAATATCAATAACCTCAGATATGCAGATGACACCACCCTTATGGAAGAAAGTGACAAAGAACTAAAGAGCCTCTTGATGAAAGCGAAAGCGGAGAGTGAAAAAGTTGGCTTAAAGCTCAACATTCAGAAAACGAAGATCATGGCATCTAATCCCATCATTTCATGGGAAACAGATGGGGAAACGGTGGAAACAGTGTCAGATTTTATTTTTTTGGGCTCCAAAATCACTGCAGATGGTGATTGCAGCCATGAAATTAAAAGATGCTTACTCCTTGAAAGGAAAGTTATGACCAACCTAGATAGCATCTTCAAAAGCAGAGACATTACTTTGCCAACAAAGGTCCATCTAGTCAAGGCTATGGTTTTCCCAGTGGACATGTATGGATGTGAGAGTTGGACTGTGAAGAAAGCTGAGCGCCGAAGAATTGATGCTTTTGAACTGTGGTGTTAGAGAAGACTCCTGAGAGTCCCTTGGACTGCAAGGCGATCCAACCAGTCCATCCTAAAGGAGATCAGTCCTGGGTGTTCTTTGGAAGGAATGATGCTGAAGCTGAAACTCCAGTACTTTGGCCACCTCATGCGAAGAGTTGACTCATTGGAAAAGACTGGGAGGGATTGGGGGCAGGAGGAGAAGGGGACGACAGAGGATGAGATGGCTGAATGGCATCACCGACTCGATGGACATGAGTTTAAGTAAACTCCAGGAGTTGGTGATGGACAGGGAGGCCTGGTGTGCTGCAATTCATGGGGTCGCAAAGAGTCGGACACGACTGAGCAACTGAACTGAACTGAAGCACAAACCAACTTTTTCATTTTGTTATTTTAGTAAAATAGTTTTCAGTTTTATTTTCCCAGGTCTCTCCTCAGCAGTGGGACAATACAGTGTAACTTTCTCTAGCTGCTGGGAAAATTTCTTAGCACTTGAAGGAAACTGTTGGCTTTCAGAAATGAACAGACCAATTTCCACTAAAATGTAGACAAAATTGAAACAGCAAAAAGCAGTTTAGAAGAGGGTCAAGCCAAACAGAAAAGCAAATTTTATAAAATCAGTTTTCTGGGACTTTTCTTCAAGTCAGTTTCCTAATTTCAAAAAGTCAAAGCACAGCATTCCTACTTAATATTATATCTGTAGGTCTTTTATTGTTTAAATTGTACAAATTTTTCATTATTTCGAAAGTTCTAAGAACCTTTTTAAATTTGAGGAGTTGTTGAGCATAAGCTAGATTTATAAGAAAGGCTAGGATTTGGCAACTTCTTCCAGTGTTTTGTAAAAGTTGTAGTACTTGCCAGGTAAAGGATGACCTTAGTTGATGCAGACAGAGAAGGCCTCCATTTGCTCACAGTACCCTAACCCACAAACCTGAGATTCTCCAGCTGAATGTATTCCGCCACCAGAATGCTGACTTACTGCAATTTAAGAAAATGGAACAGAGAATCTGGCCTGTCTGGGGCCCATACTTGATCAAGTTACGGTGTTCCAATGTCCAGGTTTGTCAAAAAGGTGGTCTTCTCAAGGTATTCCAAAATGATTTCATTCTAGAGGGACTGTATCATATAAACTAAATTTGCAAATAAACTTCTGTATTTATAAATGGTGGATTTTCAGTTTATGATAGAAAAATGCCTCCTCTCCAGTTAGAATTCTTAGATCCCATTACTACCTCCACCTTGCTTGGTGTGCATGAAATCGTGTCCTAAGCAAGAGATTCTAGATGAAGTTCAACAACAAAAAACATTACTAGTTTGTTTATTTTTAGTTATGCTGACTAAATACTGCTACATGCTTGTTCTTGGCACCCTTCTTTTCTAGACTAGCAGTTTCTCTTTTTCTGTAGAAGACATTTCTCCTTTTGACATGGTTTTGTGCTGTTGATCAGCTTTAGGACAGGCCCATATACACCTCCTTCCTCAGTCTGCCACCATTTGGTATATGTGTGTCTCTGGTTTTCATTCCTTCCTCAGAGGCTGACCATGTTGCATTCACTACAGCACAGAATTTTTCTTAGCTTCATTCTTCGGCTGTCTTTAAATTTTTGGAGGGCCTCCCTCTTGCCTCAAGTGCCTTCTCTACCACCACTTAGTTCTTTTGATTGATAAGTAAATTTTAAATGCATTTTAAATGTTTTTAAATGCATCTACCTCTGAAAGGCTTTTATTGATCGGTATATTTCATCTTTCTTTCTTCGAAATCAGTCTGAGATCCAGTTGAGTAAAAATTGCAGCTTGATGGTATAAGGGAGACAAAGTGAGGAAACAAGTAGTTTTGTAATGTGAAGCACTGTTATGGAATCAGATTCAGATAAGAAACTGCTTTCTCAGCTTTTGGTGGTGGTGGTAGTAGCTATGGAAATAATAGATGTCTTAATGGGATAGGCACAGAGGTATCTGTACATGTCCTACTCAGAACAAGTACTTGGGAAAGTATAAGCAACTGTGATGGAAACATAAGTTTAAACCTAGTTGTGAAAAGTCTTAAATAGGGCCTTAGAAAGGAAGAACTAGTTGGCAGTTTCATCCGTATTCTAGTGAAGGGATATAGCCATTTGTTTTTTCTGTCACTCCTAAGGTTTGCGGTCCTGAGCAAGATGGGTAGATTGGCCTGGCTCTGGTCATGAGACACGCCTAATTTGGGGCAGGACAGGCGCTGATTGACGACGGTCCCACCAGCATTGCACAGTGACTGGGGAGGAGTTCTCCAAAGGGAAAAGGGAAGCAAGAATTGGGGGAATCAGTGGATTGGAAAGAAGCACTGTGATTGTATCTAGTTAGAAAAATGTCACTGGCAGCCTTAGGGTGCTGAATTAGAAGAAATCTGGATTCATTTGGATTGATGTGTGTTGGTTCTAAAGTAGACCTATGGGATGTGTGAATGTCATTAGCATGCACGAGTGTTTGGAGCTCTTGAATAGAAAGACTATGTCATTCATTCAGCAAATAATCAGTAAGTGTCTGCCATGTTCCAGGAACCGTTAAGACAGTAAACATAACAAGGTCTCTGCCCCTTTAACATTTTACTGGGGGAGACAGAAAATAAATATACAGTGTGCTGGATAGAGATAAATACTTGAAGGGAAATAAAGGAGAGTAAAGTTAGTTTCTGTGGTAGAGGGAAGCGTGCTTTTCATAAAGGGTGGTCAGATGAGACCTCTGATAAGAGATAGTATTTAAAAGAATGGAGATGTGTTTTTTTGTTTCAAAACCTTAAAGAAACATAAGCTGTGATTGATAACAATAACTTCAAAGAAAAAATTATTTTCTCAG
Seq C2 exon
CCTAGGATGTGGCATTGGATATGGTTATTTGCATCGAATACCTACACGCCCATTTGAAGAAGGAAAGAAAATTTCTCTTCCAGGACAGATGACCGGTACACCAATTACTCCTCTTAAAGATGGGTTTACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013218:ENSBTAT00000017590:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=NA C2=0.533
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=FE(31.4=100)
A:
NA
C2:
PF044959=GRASP55_65=PD(11.7=35.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]