HsaINT0070799 @ hg19
Intron Retention
Gene
ENSG00000115806 | GORASP2
Description
golgi reassembly stacking protein 2, 55kDa [Source:HGNC Symbol;Acc:17500]
Coordinates
chr2:171807838-171811292:+
Coord C1 exon
chr2:171807838-171807968
Coord A exon
chr2:171807969-171811159
Coord C2 exon
chr2:171811160-171811292
Length
3191 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
AGAAAAAAATGTTTTTATAGCCT
3' ss Score
2.56
Exon sequences
Seq C1 exon
TCTGAAGATCTATTCAGCCTTATCGAAACACATGAAGCAAAACCATTGAAACTGTATGTGTACAACACAGACACTGATAACTGTCGAGAAGTGATTATTACACCAAATTCTGCATGGGGTGGAGAAGGCAG
Seq A exon
GTAAGGTCATTTTTTAGACTAAGTTATGACTGCTTAAACATACCAGTCAGATATGTTGCAGACATTGATTGTTTTTATTTTGAAAGAAATTACTGGTTTATTTTAAGACTCCTCTTAAAAAAAAGGGAAGAGCTAGTCTAGAATATTGAAACCAATTTTTTTAAAGTACATATCTAGGGAACATAGTATATATACTATAGTCCTTTTCTTTACTAACCTAAGAGCTAACAGCATTTCTTTTTAATTGAGAAATTATTGCGCATAAGCCATAATTATAGAAAAGCCTAGAATTTGGAAACATTCCACATGTTTTCAAAAGTTCTAATCCCATGCTGGGAAAAGGATAACTTAGTTGCTGCAGGCAGGAAAAGCTTCCGTTTGCTCACAGTATCTTTACCCACACTACCTGAGATTCTCCAGCTGAATGTTTCGCCACAAGTATTCTAACTTGTTGCAGTTTGAGAAAAGTAAGATAGATGTGTCATCCAAGAGTCTGGCCTATATGGGGCAATACTTGATCAAATTATCATTGTCCATTGCCCAGGTTTGTAAATGCCCAGAAATAGGATCTATTCGAGGCATTCAAAATTTATTCATTACAAGAGGCACTTCCTCATATAAACTACATTTGCAGAGAAGCTGCTATATTTGAATGACAAATTTTCAGTTTGCAATAGAAAAATACCCCCTCTCTAGTTAGAAGAATACTCAGGTCAGATTAGTACCACAAGAGTGCCTGCTGAGCATGGAATCAAACTGGAGGAAGAGATTCTGTGGACAGTGAAGACCAACAGCAAAGAACATCACATATTCTTTCATTTTTAATTATGTTAACTAAATTTGGCTACATTCTTTGGAAGACATTTTTTCTTTTGATGTGTTTAATACTGTCAGTTGGCCATTGCATTAGCTAGGCCCATACAGAACATTTTCGTCAGTCTGCCTCTGACCATGCATTTGGTCTTTTTGTGCTTCTGTTTTTATTCCTTCCTCAGAGGCTGACCACATTTCATTTATTAAATCTTATTTCTCTTAATTTCATTCTTAGGCTGTCTTTAAGTTTGCCCAGGGTCTTGCTGTTGCCTCAAGTGCATTGTCTATTACCACTTAATTACTTTGACCAATAAGCACCTTGTTTTCAAATGTAGCTACCTCTGAAAGGCCATAATTGATCACTATAAATTATTTAATCTTTATTTCTCTAAATCCCAGTCCAGTGAGAATTGCAGGGTTTTGTTTGTTTGTTTGGAGACAGCGTCTTGCTCTCTGGGCTGGAGCACAATCATAGTTCACTGCAGCCTTTAACTCCTGGGCTCAAGCTGTCCTCCCGCCTCAGCTTCCTGAGTACCTGGGACTACAGGTGTACACACTGTACTTGGCTAATTTAGAAACTCTTTTTTAGAGATGGGGCCTTGCTTTGTTTCCCAGGCTAGTCTTGAACTCTTCGCTTCAAGCAATCTTCCCACCTTGGCCTCCCAAAGTCCTGAGATTATAGGTGTGATCTTCCATGCCTGGCCGAATTGCAGTTTTGATTGTGAGGGAAGAAGGGAAGAAGGAACAAATAATTGTGAGATGAAGCATCATTGTGCATATCAGACTGGTAAAGGAGGAGCTAGGCCTGGCATGGTGGCTCACGCCTGTAGTACTACCGCTTTGGGAGGCTGAGGCGGGTGGATCACTTGAACTCAGGAGTTCAGTACCAGCCTGGGCAACCTGAAGAACCGTTGTCTCTACAAAAAATACAAAAATTAGCCAGATGTGGTGGCATGCACCTATAGTCCCAGCTACTCAGGAGGCTCAGGCGGGAGGATTGCTTGAGCCCAGGAGGCAGAGGTCGCAGTGAGCCAAGATCATGCCACTGTGCTACAGCCTGGGCAACAGAATAATAAATTGTCTTAATAAATAAATAAATAAATAAATAAATAAAATTAAAAAGGCTGAAGTTGGCTACTGCCTGCTCACCCAGCTTTTGGTGGCAGTGGAGATAATAGATGATGTGGCAGGAGAAGGGCACAGAGGTATTCATGCATGGCCTACTCTGAAATTGTCAAGTTGTTTGGGAAATAAAAGACATCATGATGGAAACATAAGTTGGAACCTGATTATGGAGAGCCTTAAATACCACGGTCAGGACTTCCGATATATTTTGAGCAGTTGAGGCTGTGATAATTGTATCAGTAAGGGGTTTTGGGTTCAAATGGTAAAAACTAGCTGTCACCATCATAAGCAGATAACATACTTAATGATATGGATTAGCTCATATAATCAAGGAAACAGCTGAAGAACCAGATGTAGAAAGGACAGGACTCAGAAAACCTAGGGATTTAGATAGGAAGAAGTATTTGGCAATGTCATCAGCATTCATTCTACTAAACCCATTTTTGTTTTTTCTCTGACTCCCAAGGTTTGCAGCCATGGGCAAGAGAAATTGGCCTGGCTTTGACCATGAGCCATTCCCTTGGTTTGGGCAGGGCAGACACTCTGATTGACAATCCTACCAGCACTGCACACAACAGCAGAGAAGTAATTCCCCAAAGGGAGGAAAGAGAAAGGAATGTTGAGAAGACATCAGACTAGAAAGAAGCAATGTGATCACATCTTACTAGAAAAATGCCTCTGGTGGCAGTGGGAGGATGAAATAGAAGAGATCTGGGTTGAACATACATGACTGATTTGTGTCAGGTTCTGAAAGAGAACTATGGAATGTGTAAATGATGTCATCATACAGACGTGCTTAGAGCTCTTCAGTGGAAAGGCTGTATCGATGTCATTTGTTTAGCGAGTAATCATCAAATGTCTGCCATGTGCCGGCAGCTATGAAGGCAGTAAACAGACAAGGTCTCTGCCCTTCAGGACCTTAACATTTTGTTGGGGGAGATAGATAGTAAATAAATATGCAGTGTGTTGGATGGTGATGAATTCTTGAAAAATAAAGGAGTAAGGGTGATATCCACAGTGGAGGGCAGGGTGTTGTTTTCTGTGGGGTGGTCTGGGAGACCTCTGCTTAGATGACATTATCTAAAAGAATAGAAATTTGTTTGTTTTTATCTTTTAAAATCTCAAAGAAGGGAGTGCATGTTCAGGGCAACTTGAATCTATGCTCTTGGGTTACCCGCCCCCCCCAAAAAAAACACCTCAAAGAAATACAAGCTGTGATAGATAACAACGTTAAGAAAAAAATGTTTTTATAG
Seq C2 exon
CCTAGGATGTGGCATTGGATATGGTTATTTGCATCGAATACCTACACGCCCATTTGAGGAAGGAAAGAAAATTTCTCTTCCAGGACAAATGGCTGGTACACCTATTACACCTCTTAAAGATGGGTTTACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115806-GORASP2:NM_015530:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=NA C2=0.422
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=FE(31.4=100)
A:
NA
C2:
PF044959=GRASP55_65=PD(11.7=35.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)