DreINT0073962 @ danRer10
Intron Retention
Gene
ENSDARG00000015126 | gorasp2
Description
golgi reassembly stacking protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1659]
Coordinates
chr6:3708605-3708947:+
Coord C1 exon
chr6:3708605-3708735
Coord A exon
chr6:3708736-3708814
Coord C2 exon
chr6:3708815-3708947
Length
79 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
TGATTATTTTCCCGATTCAGTCT
3' ss Score
6.62
Exon sequences
Seq C1 exon
TCAGAGGACTTGTTCTCATTGATAGAAACGCATGAGGGCAAAGGCCTGAAGCTCTACGTCTACAACACTGACACAGACAACTGCAGAGAAGTGGTCATTACACCCAACAGTGCCTGGGGCGGAGAGGGCAG
Seq A exon
GTGTGTGTGATTGCGTGCAAACTACCTTTCTGTGATCCTTTACTCTGTCAAATCTAACATGATTATTTTCCCGATTCAG
Seq C2 exon
TCTTGGCTGTGGGATTGGATACGGCTACCTTCACAGAATCCCAACCCGACCCTTTGAAGAGGGCAAGAAAATCAGTTTCCCCGGACACACCCCCAGTGAGCCTGTTAGCCCGCTAAAGGACGGCTTCACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000015126:ENSDART00000013743:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=NA C2=0.556
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=FE(31.4=100)
A:
NA
C2:
PF044959=GRASP55_65=PD(11.7=35.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGCCTGAAGCTCTACGTCT
R:
GTGTGTCCGGGGAAACTGATT
Band lengths:
181-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]