Special

MmuINT0072362 @ mm9

Intron Retention

Gene
ENSMUSG00000014959 | Gorasp2
Description
golgi reassembly stacking protein 2 [Source:MGI Symbol;Acc:MGI:2135962]
Coordinates
chr2:70517489-70521086:+
Coord C1 exon
chr2:70517489-70517619
Coord A exon
chr2:70517620-70520953
Coord C2 exon
chr2:70520954-70521086
Length
3334 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGA
5' ss Score
10.03
3' ss Seq
ATAAGAAAAATGTTTTTTAGCCT
3' ss Score
1.85
Exon sequences
Seq C1 exon
TCTGAAGACCTGTTCAGCCTTATTGAGACCCACGAAGCAAAGCCCCTGAAGCTCTACGTGTACAACACAGACACAGACAACTGCAGAGAAGTGATCATCACACCAAACTCTGCATGGGGCGGAGAAGGCAG
Seq A exon
GTACGATCCTTCACAGTGAAATTATGACTGCTTAGTCTTAGCAGTCAGAGATGTGTTACAACTTTTATCTTACTACGTTATAAAAGAATGCTTTTGTTTTTAAATGACATCTTGATTTAAGAAAAAAAACAGAAAAAAAATGATGTAGAATATTGAAGTTAACAATACATTTTTTAAAGGTGCATGCCTAGGGAAAATCGCACCTATTTTATAGCCCATTTGTTTTGCTTTGCTCTGCTCTTCTTGGCCTAAGAGCCAACTGCCTTTCTGATTTGAGAAATTGTCGATTGTAAATCATAGTTAAGAAAAGCCTATGCAGAATTAAACTTCACACATATTCTCACCTCTGCTCCAATGTATGGTTTCCTTGCTTCCTAGAGCAAGGAAGGACTCCACATGGACTCATAGCCTCACAGCGTTTGTATTTCACTACCTAAGGTTCTGGAGTGAAATGTGTTTAACCACCAGAATTCTGAGTCGTTGCAAGTCAAGGAAAGTAAGATAGGGTGTCTTTCGAGCCTCTGGGCTGCCTGTGGCAGCCCTTGATCATGTTACCATTGTCTCCTGTCCAGCTTATTGCACCCAGAAGTAAAGACTTCTCAAGGCATTCCTAATTGATCCACCTCAGGGGTAGATTGTGTGCCTGGTGAGTACAGAGCCCTGGCTTTGATCCCCAGCACTGTATAAAACCAGACATTATATACATACAGCCCTCTAATCACAGCATTCAGGAAGTAGAAGCGGAAGGGCAGCAAGTTGAAGAGCATCTTGAACCACGTAAGACACTGTCTCAAAAATAACCCCCTTTAGAAGGACTGCCTCATAAACTTAATTTGCAAAGAAGCGTCTGTACTGCATTTGGGGGCACATTTTTGATTCACAGCACAGAAAGGCCCTCTCCCAGTGTGTTTTTGTTTTCGTTTTCTTTCTCTGGCTGTGATACAATACCCTGGCAGAGAGCGGCTTGTGGGGAGACAGCTGTTACCTTAGCTCACAAGTTCAGGTTGCAGGCCATCACTGTGGCAGGAGCTTGAGACATCGAGTCATAGCAAGAAAGTGAAGATGTGTGCTCAGTACTCTGCTAGTTTTCTCTGCTCTGACACAGGACAGGGACCCAGACCAAGGGATGGACTGGGCTTTCTGCATCAATCCCCACAGCTACACCACAGGCCACCCTGATCTGGACAGAACCTCACCGAGACTGTGCACACTGTGGAAGAATAGACAAGTCAGATTAGCGCCGCAGACTGCAGTGAGATGGAGCATGGGTCACAGAAACGAAATAGCTTTATACAGTGAGTCCCTGCAGCAGAGACATCACTTGTTCTTTCAGGGTTTCTTTTTTCTTTTTTTTTTTTTTTTAAGGAATTATATGTTTATTTTATATGAGTACATTCAGCCACACAAGAGGCGGGCATCAGATCCCATTGCAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTGACTGAGCCATCTCTCCAGCCCTTTGATCTTTCATGTTTAATGACATTGACTGTATACTGTACATCAGAGCCCTTCTGTTGTAAACATCTACCTATCGTTCCTTTCCTTTGAAGACTTTCTGCTTTTATATGGTTTAATACCATTTATGGGCATCTCTTTAGACAGTTCCTTTTTGGCCATTTTCTAAGTGTGCCCTGCCTGTGCACTCAGGATCTCGGCCTCTTGTCCTTCATTCCTCAGGAGCTGACCAGGTGTTACTCAGCCACTCTTCATTTCAAGCCTCTCTTGAATTTGCAGCAGATTTTGTTGTTGCTTCAAGCTCTTTCTCTGTCATTACCTAGTTATTTTGAATAGCAGGCACTTCGTAAGCCAGTAGGGTGGTGCCCACCCCAGTGCTGAGAAAGTTGATATAGCAGGATGGAATCCAAGTTTAAGATCAGCCTGGGCTACATAGCAAAACCCTGTTGTTCCCATCAAACACTATCCCCCAGCAAAAAACAAAACAAAACAAAACAAACAACCATCACAAAACTCCTTGCTTTAAAATGTGATTATGCCAAAAGGCGATCATTCATCAATATAGATGACTTTATCTTTCTTCCATTAATTTTGAGAGAAAGTGTAGCTTTGATATGAGAAAATGGAAGTGTAATTTTGAAATACAAAGCATCACTGTGAAAATCAGATTTGGATAAGGAAGAACTGAAGTTGGATACTGCCCACTCCACCAGCTTTTGGTAGTAGTGGGGCCAACAGAGATACCATGTGTGCCTTGGCAAAGGAGAGAGATGGAGGAATCCGTGCATAGTGGCTCTGAAAGTGCCAGGTGCCAGGGAAAGATGAGATTGTGGTGGAAGCAGATTGGAACCTTACCTTGTCAATGACCGTAAATGCAGTGGTCCAGATTTGGCTTACTTTCAGCTATAAGACTCAACTTATATAAGCTGTAAGATAAGTAAGCATTCATTGACCCCACAGTGCAGAAAAGAGCTGTCACCACATTCATATGGATTCGTGCTTGTCCCTAGAGACAGCTAAAGACCCAGGTGCAGAAAAAAGCATTCCACTGATAAAAGAACGAGCCTATTTTTTAGTTTTCGTGTTACTTCCAAGATTTTCAGCTCTGGGCAGAAGCTGATCGGCTGACTTGGGCCATGAGTTGCTTTGTTTGATTGGCAGAGTAAAGCACTGCACTCAGGACAGCAGGACTTCCCCAGAGGAAGAGGAAGAAGTGAGCCAGCAGCCTGGAAAGAAGCAGTGTGCTCACATCTGTTAGAAAGGTGCCTCTCCTAACAGTGCAGGAACAAAAGGAAGAAACTGTCATCAAATATATAAATCTGGTTTATGCTGTACTCATCAAATGATATCATCATATAGATGTGTGTAGAGATCTTCAGTGGGCAGGCAGGCAGGGTGTGATTTATGCAGTAGGTAATAATTAGGCTCTGCCTAGTACCGGAAACTGTTAAGGTAATAAAAAGCAAAGACTGTTCCTACTCGCCTTAATATTTTATTAGGGAACAGATAGTAAAAGTAAACATGCCATGTGCTGAATGGTGATAAATGTTTGAAGAAAACACAAGAACTAAGAGAAGTGCCCAGAGTGGACTTACAGTGTTATATGTAGGGTGGAGCCCAGAGACCTCTGGGAAGATGGCATTATTTAAAAGAATGAAATGCAGATGAAGACATGAGGATCAGGAGTCCAGACTACATGAGACCATGTCTCAAGAAAACCCAAAGGAGTGGGAGGAAATACATGGGCGTATATGTTTTAAAACCTCAAAGAAATGAATTTGTGTTTTATAACAATAAGAAAAATGTTTTTTAG
Seq C2 exon
CCTTGGATGTGGCATTGGCTATGGTTATTTGCACCGAATACCTACACGCCCCTTTGAAGAAGGAAAGAAGATTTCCCTTCCAGGACAAATGACTGGTACCCCCATTACTCCTCTTAAGGATGGGTTTACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014959-Gorasp2:NM_027352:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption upon sequence inclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.045 A=NA C2=0.511
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF044959=GRASP55_65=FE(31.4=100)

							
A:
NA

							
C2:
PF044959=GRASP55_65=PD(11.7=35.6)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000028509





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000107820, ENSMUSP00000107824, ENSMUSP00000121549
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr2:170951459-170954649 
LOW PSI
HsaINT0070799
(GORASP2)
Human
(hg19)
chr2:171807969-171811159 
LOW PSI
HsaINT0070799
(GORASP2)
Rat
(rn6)
chr3:56983703-56986677 
Cow
(bosTau6)
chr2:25577544-25581928 
LOW PSI
BtaINT0067991
(GORASP2)
Chicken
(galGal4)
chr7:17672651-17673189 
LOW PSI
GgaINT0050562
(GORASP2)
Chicken
(galGal3)
chr7:19634417-19634955 
LOW PSI
GgaINT0050562
(Q5F353_CHICK)
Zebrafish
(danRer10)
chr6:3708736-3708814 
LOW PSI
DreINT0073962
(gorasp2)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"