MmuINT0072362 @ mm10
Intron Retention
Gene
ENSMUSG00000014959 | Gorasp2
Description
golgi reassembly stacking protein 2 [Source:MGI Symbol;Acc:MGI:2135962]
Coordinates
chr2:70679432-70683029:+
Coord C1 exon
chr2:70679432-70679562
Coord A exon
chr2:70679563-70682896
Coord C2 exon
chr2:70682897-70683029
Length
3334 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGA
5' ss Score
10.03
3' ss Seq
ATAAGAAAAATGTTTTTTAGCCT
3' ss Score
1.85
Exon sequences
Seq C1 exon
TCTGAAGACCTGTTCAGCCTTATTGAGACCCACGAAGCAAAGCCCCTGAAGCTCTACGTGTACAACACAGACACAGACAACTGCAGAGAAGTGATCATCACACCAAACTCTGCATGGGGCGGAGAAGGCAG
Seq A exon
GTACGATCCTTCACAGTGAAATTATGACTGCTTAGTCTTAGCAGTCAGAGATGTGTTACAACTTTTATCTTACTACGTTATAAAAGAATGCTTTTGTTTTTAAATGACATCTTGATTTAAGAAAAAAAACAGAAAAAAAATGATGTAGAATATTGAAGTTAACAATACATTTTTTAAAGGTGCATGCCTAGGGAAAATCGCACCTATTTTATAGCCCATTTGTTTTGCTTTGCTCTGCTCTTCTTGGCCTAAGAGCCAACTGCCTTTCTGATTTGAGAAATTGTCGATTGTAAATCATAGTTAAGAAAAGCCTATGCAGAATTAAACTTCACACATATTCTCACCTCTGCTCCAATGTATGGTTTCCTTGCTTCCTAGAGCAAGGAAGGACTCCACATGGACTCATAGCCTCACAGCGTTTGTATTTCACTACCTAAGGTTCTGGAGTGAAATGTGTTTAACCACCAGAATTCTGAGTCGTTGCAAGTCAAGGAAAGTAAGATAGGGTGTCTTTCGAGCCTCTGGGCTGCCTGTGGCAGCCCTTGATCATGTTACCATTGTCTCCTGTCCAGCTTATTGCACCCAGAAGTAAAGACTTCTCAAGGCATTCCTAATTGATCCACCTCAGGGGTAGATTGTGTGCCTGGTGAGTACAGAGCCCTGGCTTTGATCCCCAGCACTGTATAAAACCAGACATTATATACATACAGCCCTCTAATCACAGCATTCAGGAAGTAGAAGCGGAAGGGCAGCAAGTTGAAGAGCATCTTGAACCACGTAAGACACTGTCTCAAAAATAACCCCCTTTAGAAGGACTGCCTCATAAACTTAATTTGCAAAGAAGCGTCTGTACTGCATTTGGGGGCACATTTTTGATTCACAGCACAGAAAGGCCCTCTCCCAGTGTGTTTTTGTTTTCGTTTTCTTTCTCTGGCTGTGATACAATACCCTGGCAGAGAGCGGCTTGTGGGGAGACAGCTGTTACCTTAGCTCACAAGTTCAGGTTGCAGGCCATCACTGTGGCAGGAGCTTGAGACATCGAGTCATAGCAAGAAAGTGAAGATGTGTGCTCAGTACTCTGCTAGTTTTCTCTGCTCTGACACAGGACAGGGACCCAGACCAAGGGATGGACTGGGCTTTCTGCATCAATCCCCACAGCTACACCACAGGCCACCCTGATCTGGACAGAACCTCACCGAGACTGTGCACACTGTGGAAGAATAGACAAGTCAGATTAGCGCCGCAGACTGCAGTGAGATGGAGCATGGGTCACAGAAACGAAATAGCTTTATACAGTGAGTCCCTGCAGCAGAGACATCACTTGTTCTTTCAGGGTTTCTTTTTTCTTTTTTTTTTTTTTTTAAGGAATTATATGTTTATTTTATATGAGTACATTCAGCCACACAAGAGGCGGGCATCAGATCCCATTGCAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTGACTGAGCCATCTCTCCAGCCCTTTGATCTTTCATGTTTAATGACATTGACTGTATACTGTACATCAGAGCCCTTCTGTTGTAAACATCTACCTATCGTTCCTTTCCTTTGAAGACTTTCTGCTTTTATATGGTTTAATACCATTTATGGGCATCTCTTTAGACAGTTCCTTTTTGGCCATTTTCTAAGTGTGCCCTGCCTGTGCACTCAGGATCTCGGCCTCTTGTCCTTCATTCCTCAGGAGCTGACCAGGTGTTACTCAGCCACTCTTCATTTCAAGCCTCTCTTGAATTTGCAGCAGATTTTGTTGTTGCTTCAAGCTCTTTCTCTGTCATTACCTAGTTATTTTGAATAGCAGGCACTTCGTAAGCCAGTAGGGTGGTGCCCACCCCAGTGCTGAGAAAGTTGATATAGCAGGATGGAATCCAAGTTTAAGATCAGCCTGGGCTACATAGCAAAACCCTGTTGTTCCCATCAAACACTATCCCCCAGCAAAAAACAAAACAAAACAAAACAAACAACCATCACAAAACTCCTTGCTTTAAAATGTGATTATGCCAAAAGGCGATCATTCATCAATATAGATGACTTTATCTTTCTTCCATTAATTTTGAGAGAAAGTGTAGCTTTGATATGAGAAAATGGAAGTGTAATTTTGAAATACAAAGCATCACTGTGAAAATCAGATTTGGATAAGGAAGAACTGAAGTTGGATACTGCCCACTCCACCAGCTTTTGGTAGTAGTGGGGCCAACAGAGATACCATGTGTGCCTTGGCAAAGGAGAGAGATGGAGGAATCCGTGCATAGTGGCTCTGAAAGTGCCAGGTGCCAGGGAAAGATGAGATTGTGGTGGAAGCAGATTGGAACCTTACCTTGTCAATGACCGTAAATGCAGTGGTCCAGATTTGGCTTACTTTCAGCTATAAGACTCAACTTATATAAGCTGTAAGATAAGTAAGCATTCATTGACCCCACAGTGCAGAAAAGAGCTGTCACCACATTCATATGGATTCGTGCTTGTCCCTAGAGACAGCTAAAGACCCAGGTGCAGAAAAAAGCATTCCACTGATAAAAGAACGAGCCTATTTTTTAGTTTTCGTGTTACTTCCAAGATTTTCAGCTCTGGGCAGAAGCTGATCGGCTGACTTGGGCCATGAGTTGCTTTGTTTGATTGGCAGAGTAAAGCACTGCACTCAGGACAGCAGGACTTCCCCAGAGGAAGAGGAAGAAGTGAGCCAGCAGCCTGGAAAGAAGCAGTGTGCTCACATCTGTTAGAAAGGTGCCTCTCCTAACAGTGCAGGAACAAAAGGAAGAAACTGTCATCAAATATATAAATCTGGTTTATGCTGTACTCATCAAATGATATCATCATATAGATGTGTGTAGAGATCTTCAGTGGGCAGGCAGGCAGGGTGTGATTTATGCAGTAGGTAATAATTAGGCTCTGCCTAGTACCGGAAACTGTTAAGGTAATAAAAAGCAAAGACTGTTCCTACTCGCCTTAATATTTTATTAGGGAACAGATAGTAAAAGTAAACATGCCATGTGCTGAATGGTGATAAATGTTTGAAGAAAACACAAGAACTAAGAGAAGTGCCCAGAGTGGACTTACAGTGTTATATGTAGGGTGGAGCCCAGAGACCTCTGGGAAGATGGCATTATTTAAAAGAATGAAATGCAGATGAAGACATGAGGATCAGGAGTCCAGACTACATGAGACCATGTCTCAAGAAAACCCAAAGGAGTGGGAGGAAATACATGGGCGTATATGTTTTAAAACCTCAAAGAAATGAATTTGTGTTTTATAACAATAAGAAAAATGTTTTTTAG
Seq C2 exon
CCTTGGATGTGGCATTGGCTATGGTTATTTGCACCGAATACCTACACGCCCCTTTGAAGAAGGAAAGAAGATTTCCCTTCCAGGACAAATGACTGGTACCCCCATTACTCCTCTTAAGGATGGGTTTACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014959:ENSMUST00000028509:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=NA C2=0.511
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=FE(31.4=100)
A:
NA
C2:
PF044959=GRASP55_65=PD(11.7=35.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types