BtaINT0068395 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004204 | GPR107
Description
Bos taurus G protein-coupled receptor 107 (GPR107), mRNA. [Source:RefSeq mRNA;Acc:NM_001099164]
Coordinates
chr11:100444053-100444425:+
Coord C1 exon
chr11:100444053-100444103
Coord A exon
chr11:100444104-100444345
Coord C2 exon
chr11:100444346-100444425
Length
242 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
AACTGGGTCTTCTTTCTCAGGAT
3' ss Score
8.43
Exon sequences
Seq C1 exon
ATTGGATTCAGCCTAGACCGAACAAAGAACGATGGCTTTTCTTCGTATCTG
Seq A exon
GTGAGCATCGAGTGCGTGACCTGACGCCCCCTGCACTTGCGCCCAAGCCCTGGGTGGGAGTGCCCTGCCCCTGTCAGCGCTGCTTCCTGAGGTGGCAGCTTCGACTTCCAGGCGTCTGAGCAGCCGCAGTTGTGTCTTTTGAGTGGAGGCTGGGCCACTTACTTGCTTTGTTCATGTAAACCTTTTGTTCTTGTTGTAGTGTGACTGAATAACATGATGTGTAACTGGGTCTTCTTTCTCAG
Seq C2 exon
GATGAAGATGTGAATTACTGTATTTTAAAGAAGCAGTCTGCCTCTGTCACGCTTTTAATCCTAGACATCTCCAGAAGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004204:ENSBTAT00000005512:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development