MmuINT0072814 @ mm10
Intron Retention
Gene
ENSMUSG00000000194 | Gpr107
Description
G protein-coupled receptor 107 [Source:MGI Symbol;Acc:MGI:2139054]
Coordinates
chr2:31168164-31168879:+
Coord C1 exon
chr2:31168164-31168214
Coord A exon
chr2:31168215-31168796
Coord C2 exon
chr2:31168797-31168879
Length
582 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
ACTTGCTCTTCCTTTGGCAGGAT
3' ss Score
9.91
Exon sequences
Seq C1 exon
ATCGGATTCAGTCTGGATCGGACTAAGAACGATGGCTTTTCTTCTTACCTG
Seq A exon
GTAAGTTGCCTTTTAAAACATTTTTTTGTGTGTTGGTATTTTGCCTACATGCTTGTCTGAGCAACACATGCTTGCCTGGTGCTGTCAGAGGCTCCCCTGGAACTGAGTTACAGTTATGATCATGGGTGCTGAGAATCAGGATCTCTGCAAGAATACAGAATACTTACAGAATAAGTGCTCTTGACAACTGAGTCTTCTTTCTAGCCCCTGTTCCCTTTTTAAAGAGACAGTAGGGGATGGCAGGGTTTCATTCTGTAGTCCAGGGTACTCTCACACTTGGAGCAGTCCTCCTGCCTCAGTCTCCCGAGTCCTAGGATTACAGGCACGCTCCACCACACTCTGGATCTTAGACTATCCCAGAACACACTGGTTGGTTTTCCCACCTCTACTTCCCAGGCGCTAGGATTGCAGTGGCCTGACTGCAGTCCTCACTGGGGCTCAGGACACCCTTCAGCCCACAGTCCTATTCGAAGGTGGTTGCTGCTGAAACTTGTAGGTTCTGTTGGAGGGAGCAGGAGTTGTTGATGTGTCTCATTCTTCCATAGTGAACACGATGACACACACTTGCTCTTCCTTTGGCAG
Seq C2 exon
GATGAAGATGTGAATTACTGTATTTTAAAAAAGAAGTCCATGTCTTCTGTCACTCTTGTCATCTTAGACATCTCTGGAAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000194:ENSMUST00000056433:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types