MmuINT0072814 @ mm9
Intron Retention
Gene
ENSMUSG00000000194 | Gpr107
Description
G protein-coupled receptor 107 [Source:MGI Symbol;Acc:MGI:2139054]
Coordinates
chr2:31023684-31024399:+
Coord C1 exon
chr2:31023684-31023734
Coord A exon
chr2:31023735-31024316
Coord C2 exon
chr2:31024317-31024399
Length
582 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
ACTTGCTCTTCCTTTGGCAGGAT
3' ss Score
9.91
Exon sequences
Seq C1 exon
ATCGGATTCAGTCTGGATCGGACTAAGAACGATGGCTTTTCTTCTTACCTG
Seq A exon
GTAAGTTGCCTTTTAAAACATTTTTTTGTGTGTTGGTATTTTGCCTACATGCTTGTCTGAGCAACACATGCTTGCCTGGTGCTGTCAGAGGCTCCCCTGGAACTGAGTTACAGTTATGATCATGGGTGCTGAGAATCAGGATCTCTGCAAGAATACAGAATACTTACAGAATAAGTGCTCTTGACAACTGAGTCTTCTTTCTAGCCCCTGTTCCCTTTTTAAAGAGACAGTAGGGGATGGCAGGGTTTCATTCTGTAGTCCAGGGTACTCTCACACTTGGAGCAGTCCTCCTGCCTCAGTCTCCCGAGTCCTAGGATTACAGGCACGCTCCACCACACTCTGGATCTTAGACTATCCCAGAACACACTGGTTGGTTTTCCCACCTCTACTTCCCAGGCGCTAGGATTGCAGTGGCCTGACTGCAGTCCTCACTGGGGCTCAGGACACCCTTCAGCCCACAGTCCTATTCGAAGGTGGTTGCTGCTGAAACTTGTAGGTTCTGTTGGAGGGAGCAGGAGTTGTTGATGTGTCTCATTCTTCCATAGTGAACACGATGACACACACTTGCTCTTCCTTTGGCAG
Seq C2 exon
GATGAAGATGTGAATTACTGTATTTTAAAAAAGAAGTCCATGTCTTCTGTCACTCTTGTCATCTTAGACATCTCTGGAAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000194-Gpr107:NM_178760:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0400010=Sas10_Utp3=FE(22.9=100)
A:
NA
C2:
PF0400010=Sas10_Utp3=FE(38.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: